RetrogeneDB ID: | retro_btau_1351 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 4:60916783..60917362(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS7 | ||
Ensembl ID: | ENSBTAG00000016224 | ||
Aliases: | None | ||
Description: | 40S ribosomal protein S7 [Source:UniProtKB/Swiss-Prot;Acc:A6H769] |
Percent Identity: | 78.87 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MFSSSAKIVKPNGEKPDEFESGISQALLELEMNSDLKAQLRELNITAAKEIEVGGGRKAIIIFVPVPQLK |
MF.SS.KI.KPN.EK..E.E.GISQALLELEMNSDLKAQLRE.NIT.A.E.EVGGG.KAIIIFVP..QLK | |
Retrocopy | MFISSVKIMKPNIEKLEESELGISQALLELEMNSDLKAQLREPNITDAEETEVGGGWKAIIIFVPIRQLK |
Parental | SFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTAVHDAILEDLVFPSEIV |
SF.KIQ..L...LEK.F.GKH..FIAQRRILP.PT.KS.TKNKQK.PRS.TLTA.HD.ILE.LVFPSEIV | |
Retrocopy | SFLKIQGQLLHKLEK-FRGKHIIFIAQRRILPNPTQKSCTKNKQKHPRSLTLTAMHDTILENLVFPSEIV |
Parental | GKRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKDVNFEFPEFQL |
GKRI..KLDGS.LI.VHLDKAQQNNVEHK.ETFS..YKKL.GKDVNFEFPEFQL | |
Retrocopy | GKRIPMKLDGS*LIRVHLDKAQQNNVEHKAETFSRLYKKLMGKDVNFEFPEFQL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 101 .22 RPM |
ERP005899_muscle | 0 .00 RPM | 1274 .70 RPM |
SRP017611_brain | 0 .00 RPM | 159 .24 RPM |
SRP017611_kidney | 0 .00 RPM | 356 .76 RPM |
SRP017611_liver | 0 .00 RPM | 195 .26 RPM |
SRP030211_testis | 0 .00 RPM | 352 .76 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000016224 | 5 retrocopies | |
Canis familiaris | ENSCAFG00000003263 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000016462 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000009795 | 2 retrocopies | |
Felis catus | ENSFCAG00000023243 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000023095 | 13 retrocopies | |
Loxodonta africana | ENSLAFG00000015087 | 11 retrocopies | |
Myotis lucifugus | ENSMLUG00000006121 | 1 retrocopy | |
Mus musculus | ENSMUSG00000061477 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000008507 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000028165 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000025872 | 12 retrocopies | |
Pan troglodytes | ENSPTRG00000011615 | 3 retrocopies | |
Pteropus vampyrus | ENSPVAG00000002071 | 7 retrocopies | |
Rattus norvegicus | ENSRNOG00000008551 | 2 retrocopies |