RetrogeneDB ID: | retro_fcat_1735 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | E3:6572603..6573068(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EEF1B2 | ||
Ensembl ID: | ENSFCAG00000010239 | ||
Aliases: | None | ||
Description: | eukaryotic translation elongation factor 1 beta 2 [Source:HGNC Symbol;Acc:3208] |
Percent Identity: | 90.97 % |
Parental protein coverage: | 68.89 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MGFGDLKTPAGLQVLNDYLADKSYIEGYVPSQADVAVFEAVSGPPPADLYHALRWYNHIKSYEKEKASLP |
MGFGDLKTP.GLQVLNDYLADKSYIE.YVPSQADVAVFE.VSGPPPA.LYH.L.WYNHI.SYEKEK.SLP | |
Retrocopy | MGFGDLKTPTGLQVLNDYLADKSYIEEYVPSQADVAVFEVVSGPPPANLYHVLCWYNHINSYEKEKTSLP |
Parental | GVKKALGKYGPANVEDTTGSGATDSKDDDDIDLFGSDDEEESEEAKRLREERLAQYESKKAKKPALVAKS |
GVKK.LGKYGPANVE..TGSGATDSKDDDDIDLFGS..EEESEEAK.LREERLAQYESKKAKKPALVAKS | |
Retrocopy | GVKKTLGKYGPANVECITGSGATDSKDDDDIDLFGSEEEEESEEAKQLREERLAQYESKKAKKPALVAKS |
Parental | SILLDVKPWDDETDM |
SILLDVKPWDDETDM | |
Retrocopy | SILLDVKPWDDETDM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 86 .88 RPM |
SRP017611_kidney | 0 .00 RPM | 198 .28 RPM |
SRP017611_liver | 0 .40 RPM | 189 .34 RPM |