RetrogeneDB ID: | retro_fcat_1759 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | F1:54339538..54339915(+) | ||
Located in intron of: | ENSFCAG00000028101 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000000200 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 60. % |
Parental protein coverage: | 57.87 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 3 |
Parental | SERWKTMSAKEKGK-FEDMAKADKARYEREMKTYIPPKGET-KKKFKDP-NAPKRPPSAFFLFCSEYRPK |
SERWKTMS...K.K.FEDMAK.DK...ER.M.T..PP.G.T.K.....P.NAPK.....F.LFCSEYRP. | |
Retrocopy | SERWKTMSI*KKRKVFEDMAKGDKGH*ERKMTTSLPPTGKT>KRSSRIPVNAPKSTLLTFLLFCSEYRPQ |
Parental | IKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYE-KKAAKLK-EKYEKKDIAAYRAKGKPD |
IKG.HP.LS.GDVAKK.GE...N.A..DKQ.YE..KA..LK.EKY.KK..AA..A.G.PD | |
Retrocopy | IKGKHPSLSTGDVAKKRGEKYYNSAVNDKQLYE<RKATELK<EKY-KKEVAA**ATGEPD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 78 .85 RPM |
SRP017611_kidney | 0 .00 RPM | 77 .29 RPM |
SRP017611_liver | 0 .00 RPM | 31 .03 RPM |