RetrogeneDB ID: | retro_fcat_265 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A1:142715386..142715901(-) | ||
Located in intron of: | ENSFCAG00000023430 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGB3 | ||
Ensembl ID: | ENSFCAG00000024624 | ||
Aliases: | None | ||
Description: | high mobility group box 3 [Source:HGNC Symbol;Acc:5004] |
Percent Identity: | 55.31 % |
Parental protein coverage: | 87.94 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | GDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR |
GDP.KP.GKMS.Y.FFVQ..REE.KK..P....NF..FSKKCSERW.T.S.KEK.KF..MAKA...RY.R | |
Retrocopy | GDPMKPRGKMSSYVFFVQSYREECKKQHPVAAGNFSGFSKKCSERW*TTSAKEKGKFEDMAKAETSRYGR |
Parental | EMKDYGPAKGGKKKKDPNAP-KRPPSGFFLFCSEFRPKIK---STNPGISIGDVAKKLGEMWNNLSDSEK |
EMK...P.K.......P..P.KRPPS.FFLFCS...P.IK...S..P..SIGDVA.KLGEMW.N...... | |
Retrocopy | EMKTAIPPK--RSSRIPVHP<KRPPSAFFLFCSDNCPEIKGEHSKHPSLSIGDVAGKLGEMWTNTAADDL |
Parental | QPYNNKAAKLKEKYEKDVADYKSKGKFDGAKGPKVARKK |
...N....KL...YEKD.A.Y..KGK.D.AK...V..KK | |
Retrocopy | KAAN----KLMKIYEKDIAAY*VKGKPDKAKTGVVKAKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 5 .62 RPM |
SRP017611_kidney | 0 .00 RPM | 16 .08 RPM |
SRP017611_liver | 0 .00 RPM | 16 .98 RPM |