RetrogeneDB ID: | retro_fcat_1504 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | D2:32474662..32475199(-) | ||
Located in intron of: | ENSFCAG00000012678 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGB3 | ||
Ensembl ID: | ENSFCAG00000024624 | ||
Aliases: | None | ||
Description: | high mobility group box 3 [Source:HGNC Symbol;Acc:5004] |
Percent Identity: | 83.78 % |
Parental protein coverage: | 90.45 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | KKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDREMK |
KKPK.KMSAYAFFVQTCREE.KKKNPEVPVNFAEFSK.CSERWK..SGKEKSK.DEMAKAD...Y...MK | |
Retrocopy | KKPKSKMSAYAFFVQTCREEPKKKNPEVPVNFAEFSKMCSERWKITSGKEKSKVDEMAKADEMHYYWKMK |
Parental | DYGPAKGGKKKKDPNAPK-RPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLSDSEKQPYNNK |
.YGPAKGG.KKKDPNAPK.RP.SGFFLFCSEF.PKIKSTNPGISIGD.AKKLGEM.NNLSDSEKQPYNNK | |
Retrocopy | NYGPAKGG-KKKDPNAPK<RP-SGFFLFCSEFCPKIKSTNPGISIGDTAKKLGEMGNNLSDSEKQPYNNK |
Parental | AAKLKEK-YEK-DVADYKSKGKFDGAKGP-KVA-RKKVEEEDEED |
AAKLKEK..EK.DVADYKS.GKFDG.KGP.KVA.R.KVEE..EE. | |
Retrocopy | AAKLKEK<VEKKDVADYKSQGKFDGTKGPAKVA<REKVEEDEEEE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .23 RPM | 5 .62 RPM |
SRP017611_kidney | 0 .00 RPM | 16 .08 RPM |
SRP017611_liver | 0 .00 RPM | 16 .98 RPM |