RetrogeneDB ID: | retro_fcat_821 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B3:27254651..27255200(+) | ||
Located in intron of: | ENSFCAG00000000153 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000000200 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 87.63 % |
Parental protein coverage: | 85.19 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKAR |
MGKGDPK.PR.KMSS..FFVQTC.EEHKKKHPD.SVNFSEFSKKCSERWKTM.AK.KGKFEDMAK.DKAR | |
Retrocopy | MGKGDPKEPRNKMSSHVFFVQTC*EEHKKKHPDVSVNFSEFSKKCSERWKTMPAKDKGKFEDMAKVDKAR |
Parental | YEREMKT-YIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWN-NTAA |
YE.EMKT..IPPKGET.KKFK.PNAPKRPPSAFFLFCSEY.PKIKGEHPGLSIGDVAKKLG.MWN.NT.A | |
Retrocopy | YEKEMKT<LIPPKGETRKKFKNPNAPKRPPSAFFLFCSEYHPKIKGEHPGLSIGDVAKKLGDMWN>NTTA |
Parental | DDKQPYEKKAAKLKEKYEKKDIAAYRAKGKPDAAKKGVVKAEKSKK |
DDKQPYEKKAAKLKEKYE.KDIAAY.AKG.PD.AKKGV.KAEKSKK | |
Retrocopy | DDKQPYEKKAAKLKEKYE-KDIAAY*AKGNPDTAKKGVIKAEKSKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .23 RPM | 78 .85 RPM |
SRP017611_kidney | 1 .55 RPM | 77 .29 RPM |
SRP017611_liver | 0 .20 RPM | 31 .03 RPM |