RetrogeneDB ID: | retro_fcat_770 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B2:83723963..83724402(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000000200 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 68.87 % |
Parental protein coverage: | 68.06 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | SEFSKKCSERWKTM-SAKEKGKFEDMAKADKARYEREMKTYIPP-KGETKKKFKDPNAPKRPPSAFFLFC |
S.FSK.CS.RWKTM.S...KGKFED.AKA..A.Y.REMKT..PP.K.ETKKK.KDP.APK..PS.FFLFC | |
Retrocopy | SQFSK-CSKRWKTM>SKFSKGKFEDVAKANRAHYGREMKTHVPP>KVETKKKIKDPDAPKGIPSTFFLFC |
Parental | SEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKKDIAAYRA-KGKPDAAKKG |
.EYRPK.KG.HP.LS.G..AK.LGE.W.N..ADDK..YEKKAAKLKEK.E.KDIA.Y.A.K.K....KKG | |
Retrocopy | FEYRPKLKGQHPDLSVGNIAKRLGEIWSNSPADDKWLYEKKAAKLKEKHE-KDIAVYQA>KRKA*CGKKG |
Parental | -VVKAEKSKKK |
.VVKA.KSKKK | |
Retrocopy | >VVKAGKSKKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 78 .85 RPM |
SRP017611_kidney | 0 .00 RPM | 77 .29 RPM |
SRP017611_liver | 0 .00 RPM | 31 .03 RPM |