RetrogeneDB ID: | retro_fcat_1046 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B4:78621790..78622333(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000014767 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000000200 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 97.8 % |
Parental protein coverage: | 84.26 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKAR |
MGKGDPKKPRGKMSSYAFFVQTC.EEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKAR | |
Retrocopy | MGKGDPKKPRGKMSSYAFFVQTC*EEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKAR |
Parental | YEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADD |
YEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADD | |
Retrocopy | YEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADD |
Parental | KQPYEKKAAKLKEKYEKKDIAAYRAKGKPDAAKKGVVKAEKS |
K.PYEKKAAKLKEKYE.KDIAAYRAKGKPDAAKKGVVKAEK. | |
Retrocopy | KHPYEKKAAKLKEKYE-KDIAAYRAKGKPDAAKKGVVKAEKT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 12 .74 RPM | 78 .85 RPM |
SRP017611_kidney | 11 .95 RPM | 77 .29 RPM |
SRP017611_liver | 5 .46 RPM | 31 .03 RPM |