RetrogeneDB ID: | retro_fcat_781 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B2:95007609..95008380(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HNRNPA1 | ||
Ensembl ID: | ENSFCAG00000010150 | ||
Aliases: | None | ||
Description: | heterogeneous nuclear ribonucleoprotein A1 [Source:HGNC Symbol;Acc:5031] |
Percent Identity: | 73.75 % |
Parental protein coverage: | 68.9 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDA |
MSKSE.PK..EQL.K.FI.GLSFE.T..SLRS.FEQWG.LTD.VVMR.PN.K.SRGFGFVTYATV.EVDA | |
Retrocopy | MSKSETPKDAEQL*KFFIRGLSFEATNASLRSDFEQWGMLTDSVVMRVPNAKCSRGFGFVTYATVDEVDA |
Parental | AMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDR |
AMNA.PHKVDGRVVEPKRAVSREDSQRPGAHLT....F.GGIKEDTEEHHLRDYFEQYGK.EVIEI.TD. | |
Retrocopy | AMNAGPHKVDGRVVEPKRAVSREDSQRPGAHLTKXXXFEGGIKEDTEEHHLRDYFEQYGKTEVIEIKTDQ |
Parental | GSGK-KRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRGRSGSGNFGGGRGGG |
GSGK.K.GF.FVTFDDH..VDK..IQK.HTVNGHNCEVR..LS.QEMA..SSSQ.G..GSG......... | |
Retrocopy | GSGK<KTGFTFVTFDDHEFVDKTIIQKHHTVNGHNCEVREVLSRQEMAGDSSSQGGQNGSGXXXXXXXXX |
Parental | FGGNDNFGRGGNFSGRGGFGGSRGGG-GYGGSGDGYNGFGNDGGYGGGG |
....D..GRG.N.S.RGGFGGS.GGG...GGSGDGYN.FGNDG...G.G | |
Retrocopy | XXXSDDLGRGRNISRRGGFGGSQGGG>NNGGSGDGYNRFGNDGSNFGSG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 171 .58 RPM |
SRP017611_kidney | 0 .00 RPM | 293 .92 RPM |
SRP017611_liver | 0 .00 RPM | 187 .83 RPM |