RetrogeneDB ID: | retro_fcat_1742 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | F1:3646775..3647554(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HNRNPA1 | ||
Ensembl ID: | ENSFCAG00000010150 | ||
Aliases: | None | ||
Description: | heterogeneous nuclear ribonucleoprotein A1 [Source:HGNC Symbol;Acc:5031] |
Percent Identity: | 69.06 % |
Parental protein coverage: | 70.24 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 3 |
Parental | MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDA |
MS.SES..EPEQL.KL...GLSFETTD.SL.SH.EQWG.L...VVM..PNTK.SRGFGF.T.ATVEEVDA | |
Retrocopy | MSNSESLREPEQLWKLSVRGLSFETTDASLKSHCEQWGCLWT-VVMSNPNTKFSRGFGFFTNATVEEVDA |
Parental | AMNARPHKVDGRV-VEPKRAVSREDSQRPG-AHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKI-EVIEIM |
A..A.PHKV.GRV.V.PKRAV.RED.QR.G...L...KIFVG..KE..EE.HL...F...GK..E.I..M | |
Retrocopy | AVSAGPHKVGGRV<VKPKRAVWREDAQRLG>CPLNCEKIFVGSTKEGPEERHLKRLFSM-GKL<EAIAVM |
Parental | TDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRGRSGSGNFGGGRG |
TD.G.GKKRGFAF.TFDD.DSV.K.V.QKYH.VNGH..EV.KA.S...MASASS.QRG.SGSGNF.GGRG | |
Retrocopy | TD*GNGKKRGFAFGTFDDPDSVEKVVLQKYHAVNGHSGEVTKAPSN*QMASASSCQRG*SGSGNFDGGRG |
Parental | GGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGFGNDGGYGGGGPGYSG |
G.FGGNDNFGRG.NFSG.GGFGGSRGGGGYGGSGDG...F..DG...GGG..Y.G | |
Retrocopy | GAFGGNDNFGRGENFSG*GGFGGSRGGGGYGGSGDGCSRFDDDGSNFGGGGSYNG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 171 .58 RPM |
SRP017611_kidney | 0 .10 RPM | 293 .92 RPM |
SRP017611_liver | 0 .00 RPM | 187 .83 RPM |