RetrogeneDB ID: | retro_fcat_844 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B3:64540515..64541357(+) | ||
Located in intron of: | ENSFCAG00000005014 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HNRNPA1 | ||
Ensembl ID: | ENSFCAG00000010150 | ||
Aliases: | None | ||
Description: | heterogeneous nuclear ribonucleoprotein A1 [Source:HGNC Symbol;Acc:5031] |
Percent Identity: | 74.83 % |
Parental protein coverage: | 75.87 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | SLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRP |
SLRSH.EQW..LTDCV...DPNTKRSRGFGFVT.ATVEE..AAM.ARPHKVDGRVVEPKRA.SRE.SQ.P | |
Retrocopy | SLRSHSEQWRMLTDCVATTDPNTKRSRGFGFVT*ATVEETEAAMTARPHKVDGRVVEPKRAISREASQTP |
Parental | GAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQK-Y |
G.HLTVKKIFVGGIKEDTEEHHLRDYFEQYGK.EVIEIMT..GSGKKRGFAFVTFDD.DSVDKIVIQK.Y | |
Retrocopy | GPHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKTEVIEIMTG*GSGKKRGFAFVTFDDQDSVDKIVIQK>Y |
Parental | HTVNGHNCEVRKALSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGY |
HTVNGHN..VRK..SK.EMASASSSQRGRSGSGNFGGGRGG.FGGNDNFGRGGNFSG.GGFGGSR.G.G. | |
Retrocopy | HTVNGHNRKVRKVSSK*EMASASSSQRGRSGSGNFGGGRGGVFGGNDNFGRGGNFSG*GGFGGSR-GDGG |
Parental | -GGSGDGYNGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSG-YGGSGSYDSYNNGGGGGGFGGGSGS |
.GGSGDGYNGFG.DG...GGG..Y......Y.S.....G...SG.YGG.G.Y..........G..G.S.S | |
Retrocopy | >GGSGDGYNGFGIDGSNFGGGGSYNDFG-NYNSQSSNSGGRSSGPYGGGGQY--FAKPQNQSGYDGSSNS |
Parental | NFGGGG |
...G.G | |
Retrocopy | SSYGSG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .23 RPM | 171 .58 RPM |
SRP017611_kidney | 0 .52 RPM | 293 .92 RPM |
SRP017611_liver | 0 .10 RPM | 187 .83 RPM |