RetrogeneDB ID: | retro_fcat_474 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A3:63322982..63323930(-) | ||
Located in intron of: | ENSFCAG00000029155 | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000026870 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HNRNPA1 | ||
Ensembl ID: | ENSFCAG00000010150 | ||
Aliases: | None | ||
Description: | heterogeneous nuclear ribonucleoprotein A1 [Source:HGNC Symbol;Acc:5031] |
Percent Identity: | 81.62 % |
Parental protein coverage: | 86.06 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDA |
M.KSESPKEPEQLRKLFIGGLSFETT.ESLRSHFEQWGT.TDCVVMRDPNTKRSRGFGFVTYATVEEVDA | |
Retrocopy | MFKSESPKEPEQLRKLFIGGLSFETTNESLRSHFEQWGTITDCVVMRDPNTKRSRGFGFVTYATVEEVDA |
Parental | AMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDR |
AMNAR.HKVDGRVVEPKRAV.REDSQRPGAHLTV.KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTD. | |
Retrocopy | AMNARAHKVDGRVVEPKRAVLREDSQRPGAHLTVTKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDQ |
Parental | GSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRGRSGSGNFGGGRGGGF |
GSGKKRGF.FVTFDDHDSVDKI.IQKYHTVNGHNCEVRKALSKQEMASASSSQRGRSGSGNFGGGRGGGF | |
Retrocopy | GSGKKRGFPFVTFDDHDSVDKIAIQKYHTVNGHNCEVRKALSKQEMASASSSQRGRSGSGNFGGGRGGGF |
Parental | GGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSG |
GGNDNFG.GGNFSGRGGFGGSRGGGGYGGSGDGYNGFGNDG...GGG..Y......Y.......G....G | |
Retrocopy | GGNDNFGHGGNFSGRGGFGGSRGGGGYGGSGDGYNGFGNDGSNFGGGGSYNDFG-NYNNQSSNFGPMKGG |
Parental | YGGSGSYDSYNNGGGGGGFGGGSGSNFGGGGSYNDFGNYNN |
..G..S.D.Y....GGGG.......N.GG.GS......Y.. | |
Retrocopy | NFGGRSSDPY----GGGGQYFAKPQN*GGYGSSSSSSSYGS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 1 .61 RPM | 171 .58 RPM |
SRP017611_kidney | 6 .18 RPM | 293 .92 RPM |
SRP017611_liver | 2 .73 RPM | 187 .83 RPM |