RetrogeneDB ID: | retro_pvam_1419 | ||
Retrocopylocation | Organism: | Megabat (Pteropus vampyrus) | |
Coordinates: | scaffold_8248:22217..22829(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS4X | ||
Ensembl ID: | ENSPVAG00000012882 | ||
Aliases: | None | ||
Description: | ribosomal protein S4, X-linked [Source:HGNC Symbol;Acc:10424] |
Percent Identity: | 83.33 % |
Parental protein coverage: | 77.57 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFI |
M..GPKKHLK.VAAPKH.M.DKL.GVFA.RPST.PHKLRECL.LI.FLRNRLK.AL.GDE.KK.CMQRFI | |
Retrocopy | MTCGPKKHLK*VAAPKH*MQDKLMGVFAARPSTSPHKLRECLCLIVFLRNRLKCALIGDEDKKMCMQRFI |
Parental | KIDGKVRTDVTYPAGFMDVISIDKTGENFRLVYDTKGRFAVHRITTEEAKYKLCKVRKIFVGTKGIPHLV |
KIDG.V.TDVTYPAGFMD.I.IDKTGENFRLVYDTKG.F.VH..T.EEAKYKLCKVRKIFVGTKGIPHLV | |
Retrocopy | KIDGQVWTDVTYPAGFMDDIGIDKTGENFRLVYDTKGCFPVHQLTPEEAKYKLCKVRKIFVGTKGIPHLV |
Parental | THDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGS |
T..A.TI.Y..PLIKVNDTIQIDLETGKITDFIKFDT.N...VTGGANLG.IGVITNRERHPGS | |
Retrocopy | TDGAHTIHYSSPLIKVNDTIQIDLETGKITDFIKFDTSNMHTVTGGANLGKIGVITNRERHPGS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |