RetrogeneDB ID: | retro_pvam_930 | ||
Retrocopylocation | Organism: | Megabat (Pteropus vampyrus) | |
Coordinates: | scaffold_17381:6391..6787(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS4X | ||
Ensembl ID: | ENSPVAG00000012882 | ||
Aliases: | None | ||
Description: | ribosomal protein S4, X-linked [Source:HGNC Symbol;Acc:10424] |
Percent Identity: | 76.47 % |
Parental protein coverage: | 50.19 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 4 |
Parental | IFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNR |
..VG.KGIPHLV.HDAR...YPDPLIKVND.IQI.LET..IT.FIKFDTGNLCMVT.GANLGRIGV.T.. | |
Retrocopy | LWVGSKGIPHLVAHDARIVHYPDPLIKVNDVIQINLETDEITGFIKFDTGNLCMVTRGANLGRIGVTTKQ |
Parental | -ERH-PGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISL-PRGKG-IRLTIAEERDKRLAAKQ |
.ERH..GSFDVVHVKDA..NSF...LSNIFVIGKGNKPWISL.P.G.G.I.L.IAE.R.KRLAAKQ | |
Retrocopy | <ERH<SGSFDVVHVKDAHDNSFVIQLSNIFVIGKGNKPWISL>PIGIG>IHLIIAEDRNKRLAAKQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |