RetrogeneDB ID: | retro_pvam_1082 | ||
Retrocopylocation | Organism: | Megabat (Pteropus vampyrus) | |
Coordinates: | scaffold_2735:164455..165004(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS4X | ||
Ensembl ID: | ENSPVAG00000012882 | ||
Aliases: | None | ||
Description: | ribosomal protein S4, X-linked [Source:HGNC Symbol;Acc:10424] |
Percent Identity: | 78.49 % |
Parental protein coverage: | 69.96 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGP-HKLRECLPLIIFLRNRLKYALTGDEVKKICMQRF |
MA.GPKKHL...AAPKH.MLDKLT.VFAP.PST.P.HKLREC.PLIIFLRNRLKYAL..DE.K.ICMQ.F | |
Retrocopy | MACGPKKHLQCAAAPKH*MLDKLTNVFAPHPSTSP>HKLRECVPLIIFLRNRLKYALSRDEIK-ICMQWF |
Parental | IKIDGKVRTDVTYPAGFM-DVISIDKTGENFRLVYDTKGRFAVHRITTEEAKYKLCKVRKIFVGTKGIPH |
I..DGKV.TD.TY.A.FM.DVIS.DK.GENFRL.Y.TK..FAVH..T.EEAKY..CKVRKIFVG.KGIPH | |
Retrocopy | IRTDGKVLTDTTYVASFM<DVISNDKMGENFRLIYATKDCFAVHCVTPEEAKYMSCKVRKIFVGPKGIPH |
Parental | LVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVT |
LVT.DA.TI.YPDPLI.VNDTIQIDLETGK.TDFIKFDT.NLCMVT | |
Retrocopy | LVTCDACTIHYPDPLI*VNDTIQIDLETGKVTDFIKFDTDNLCMVT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |