RetrogeneDB ID: | retro_itri_495 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393295.1:15727676..15728399(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS4X | ||
Ensembl ID: | ENSSTOG00000028692 | ||
Aliases: | None | ||
Description: | ribosomal protein S4, X-linked [Source:HGNC Symbol;Acc:10424] |
Percent Identity: | 92.95 % |
Parental protein coverage: | 91.63 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | ARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIK |
A.GPKKHLK.VAAPKHWMLDKLTGVFA.RPSTGPHKLRECLPLIIFLRNRLKYALT..EVKKICMQ.FIK | |
Retrocopy | ACGPKKHLKLVAAPKHWMLDKLTGVFALRPSTGPHKLRECLPLIIFLRNRLKYALTREEVKKICMQHFIK |
Parental | IDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVT |
IDGK..TDITYP.GFMDVISIDKTGENF.LI.DTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVT | |
Retrocopy | IDGKA*TDITYPTGFMDVISIDKTGENFCLI*DTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVT |
Parental | HDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVK |
HDARTIRYPDPLIKVNDTIQIDLETGK.TDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFD..HVK | |
Retrocopy | HDARTIRYPDPLIKVNDTIQIDLETGKVTDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDMFHVK |
Parental | DANGNSFATRLSNIFVIGKGNKPWISLPRGK |
DANGNSFAT.LSNIFVIGKGNKPWISLP..K | |
Retrocopy | DANGNSFATQLSNIFVIGKGNKPWISLPEKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |