RetrogeneDB ID: | retro_pvam_1021 | ||
Retrocopylocation | Organism: | Megabat (Pteropus vampyrus) | |
Coordinates: | scaffold_2299:58591..59348(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS4X | ||
Ensembl ID: | ENSPVAG00000012882 | ||
Aliases: | None | ||
Description: | ribosomal protein S4, X-linked [Source:HGNC Symbol;Acc:10424] |
Percent Identity: | 83.65 % |
Parental protein coverage: | 99.24 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFI |
MA.G.KKHLK.VAAP.HWMLDKLTG.FAPRPST.PHKL.ECLPLIIFLRNRLKYALTGDEVK.IC.QRFI | |
Retrocopy | MAGGLKKHLKCVAAPTHWMLDKLTGMFAPRPSTSPHKLGECLPLIIFLRNRLKYALTGDEVK-ICRQRFI |
Parental | KIDGKVRTDVTYPAGFMDVISIDKTGENFRLVYDTKGRFAVHRITTEEAKYKLCKVRKIFVGTKGIPHLV |
.IDGKVRTD.TYPAGFMDVISI....ENFR.VY.TK..FAVHRITTEEA.YKLCKVRKIFVGTK..P... | |
Retrocopy | NIDGKVRTDMTYPAGFMDVISIR---ENFRVVYGTKCHFAVHRITTEEANYKLCKVRKIFVGTKKVP--- |
Parental | THDARTIRYPDP-LIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVH |
.HDARTIRYP.P.LIKVNDTIQIDLETGKIT.FI..DTGNLCMVT.G.NL.RI.VITNR.RHPGS.DVVH | |
Retrocopy | -HDARTIRYPNP<LIKVNDTIQIDLETGKITNFIRSDTGNLCMVTRGGNLERIAVITNRKRHPGSSDVVH |
Parental | VKDANGNSFA-TRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKRLAAKQS |
VKDANGNSFA...LSNIFVIGKGNKPWISLP.GK.I.LTIAEERDKRLAAKQS | |
Retrocopy | VKDANGNSFA<PQLSNIFVIGKGNKPWISLPCGKVIHLTIAEERDKRLAAKQS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |