RetrogeneDB ID: | retro_pvam_191 | ||
Retrocopylocation | Organism: | Megabat (Pteropus vampyrus) | |
Coordinates: | GeneScaffold_1787:680257..680958(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS4X | ||
Ensembl ID: | ENSPVAG00000012882 | ||
Aliases: | None | ||
Description: | ribosomal protein S4, X-linked [Source:HGNC Symbol;Acc:10424] |
Percent Identity: | 77.87 % |
Parental protein coverage: | 88.97 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | PKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDG |
PKKHLK.V.APKHWML.KL.GVFAP.PS.GPHKL.ECLPLII.LRNRL.Y.LTG.E..K..MQ.FIKIDG | |
Retrocopy | PKKHLKHVTAPKHWMLEKLMGVFAPYPSAGPHKLKECLPLIIYLRNRLNYVLTGNEAEKVYMQ*FIKIDG |
Parental | KVRTDVTYPAGFMDVISIDKTGENFRLVYDTKGRFAVHRITTEEAKYKLCKVRKIFVGTKGIPHLVTHDA |
KV.TDVTYPAGF.D..SI....ENF.L.YDTKG.FAVH.IT.EE.KYKL.K.RKIFVGTKGIP.LVTHDA | |
Retrocopy | KVQTDVTYPAGFTDFVSINRAKENFHLIYDTKGHFAVHCITPEEVKYKLYKTRKIFVGTKGIPYLVTHDA |
Parental | RTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVT-GGANLGRIGVITNRERHPGSFDVVHVKDA |
.TI.YPD..IK.ND..QIDLET.KITDFIKFDTGNLCMVT..GANL.RI.VITNRER.PGSF.VVHVKDA | |
Retrocopy | HTICYPDLPIKANDIMQIDLETDKITDFIKFDTGNLCMVT<RGANLERISVITNRERRPGSFHVVHVKDA |
Parental | NGNSFATRLSNIFVIGKGNKPWISL |
NGN.FAT.LSNIF.IGKGNKP.I.L | |
Retrocopy | NGNHFATLLSNIFIIGKGNKP*IFL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |