RetrogeneDB ID: | retro_pvam_628 | ||
Retrocopylocation | Organism: | Megabat (Pteropus vampyrus) | |
Coordinates: | GeneScaffold_42:625876..626305(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS4X | ||
Ensembl ID: | ENSPVAG00000012882 | ||
Aliases: | None | ||
Description: | ribosomal protein S4, X-linked [Source:HGNC Symbol;Acc:10424] |
Percent Identity: | 76.71 % |
Parental protein coverage: | 55.51 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFI |
MA.GPKKHLK.VAAPK.WM.DKLT.VFAP.PST.PHKLRECL.LIIFLRNRLKYALTGDEVKKICMQ..I | |
Retrocopy | MAHGPKKHLKHVAAPKYWMMDKLTSVFAPHPSTVPHKLRECL-LIIFLRNRLKYALTGDEVKKICMQSLI |
Parental | KIDGKVRTDVTYPAGFMDVISIDKTGENFRLVYDTKGRFAVHRITTEEAKYKLCKVRKIFVGTKGIPHLV |
KIDGKV.TDVTYPAGFM.V.SI.K..ENF.L..D.KG.FA.HRI....A..K.CKVRKI..GTK...HLV | |
Retrocopy | KIDGKV*TDVTYPAGFMNVNSIGKIKENFHLIHDIKGHFAAHRIISK*A--KSCKVRKICAGTKENHHLV |
Parental | THDART |
THDART | |
Retrocopy | THDART |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |