RetrogeneDB ID: | retro_itri_1607 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393570.1:251947..252540(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSSTOG00000024661 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS4X | ||
Ensembl ID: | ENSSTOG00000028692 | ||
Aliases: | None | ||
Description: | ribosomal protein S4, X-linked [Source:HGNC Symbol;Acc:10424] |
Percent Identity: | 82.59 % |
Parental protein coverage: | 75.67 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | ARGPKKHLKR-VAAPKHWMLDKLTGVFAPRPSTGPHKL-RECLPLIIFLRNRLKYALTGDEVKKICMQRF |
ARGPKKHLK..VAAPKHWMLDKLTGV.AP.PSTGPHK..RECLPLIIF.RNRLKYALTGDE.KKICMQ.F | |
Retrocopy | ARGPKKHLKQHVAAPKHWMLDKLTGVLAPCPSTGPHKE<RECLPLIIFPRNRLKYALTGDELKKICMQHF |
Parental | IKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHL |
IKIDGKV.T.ITYP.GFMDV.SID.TGENF.LIYDT..R..VH.I.PEEAK.KL.KVRKIFVGTKG..HL | |
Retrocopy | IKIDGKVKTEITYPTGFMDVTSIDETGENFHLIYDT--RDCVHHIIPEEAKHKLFKVRKIFVGTKGSSHL |
Parental | VTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRER |
VT.DA.TI.YP.PLIKVNDTIQIDLETG.ITDFIKF.TGNLC.VT.GANLGRIG.ITN.ER | |
Retrocopy | VTQDAQTICYPNPLIKVNDTIQIDLETGNITDFIKFYTGNLCLVTRGANLGRIGMITNFER |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |