RetrogeneDB ID: | retro_hsap_2433 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 20:48573278..48574164(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000229222 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | KRT18 | ||
Ensembl ID: | ENSG00000111057 | ||
Aliases: | KRT18, CYK18, K18 | ||
Description: | keratin 18 [Source:HGNC Symbol;Acc:6430] |
Percent Identity: | 83.45 % |
Parental protein coverage: | 68.6 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 1 |
Parental | MSFTTRSTFSTNY-RSLGSVQAPSYGARPVSSAASVYAGAGGSGSRISVSRSTSFRGGMGSGGLATGIAG |
M.FTTRSTFSTNY.RSLGSVQAPSYGARPVSS..SVYAGA.GSGSRIS.S.STSF.GGMGSG.LA.G.AG | |
Retrocopy | MTFTTRSTFSTNY>RSLGSVQAPSYGARPVSSMVSVYAGARGSGSRISESHSTSFWGGMGSGDLAGGMAG |
Parental | GLAGMGGIQNEKETMQSLNDRLASYLDRVRSLETENRRLESKIREHLEKKGPQVRDWSHYFKIIEDLRAQ |
.LAGMGGIQNEKETMQSLND.LASYLDR.RSLET.N...ESKIREHLEKKGPQVRDWSH.FK.IEDLRAQ | |
Retrocopy | DLAGMGGIQNEKETMQSLNDHLASYLDRMRSLETKNWKPESKIREHLEKKGPQVRDWSHHFKTIEDLRAQ |
Parental | IFANTVDNARIVLQIDNARLAADDFRVKYETELAMRQSVENDIHGLRKVIDDTNITRLQLETEIEALKEE |
IF.NTVDNA.IVLQI.NA.LAADDF.VK.ETELAMRQSVE.DIHGL.KV.DDTN.T.LQLETEIEAL.EE | |
Retrocopy | IFTNTVDNACIVLQINNACLAADDFTVK*ETELAMRQSVESDIHGLCKVTDDTNVTWLQLETEIEAL*EE |
Parental | LLFMKKNHEEEVKGLQAQIASSGLTVEVDAPKSQDLAKIMADIRAQYDELARKNREELDKYWSQQIEEST |
LLFMKKNH.EEVKGL.AQIASSGLTVEVDAPKSQD..KIM.D..AQYD.LA.KNREELD.Y.SQ.IEE.T | |
Retrocopy | LLFMKKNHKEEVKGL*AQIASSGLTVEVDAPKSQDVSKIMTDMQAQYDKLAQKNREELDMY*SQ*IEENT |
Parental | TVVTTQSAEVGAAETT |
T.VTTQS.EVG.AE.T | |
Retrocopy | TEVTTQSTEVGTAEMT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .22 RPM | 8 .95 RPM |
bodymap2_adrenal | 0 .23 RPM | 10 .71 RPM |
bodymap2_brain | 0 .07 RPM | 1 .24 RPM |
bodymap2_breast | 0 .12 RPM | 37 .70 RPM |
bodymap2_colon | 0 .10 RPM | 68 .51 RPM |
bodymap2_heart | 0 .02 RPM | 3 .58 RPM |
bodymap2_kidney | 0 .06 RPM | 132 .71 RPM |
bodymap2_liver | 0 .09 RPM | 164 .76 RPM |
bodymap2_lung | 0 .07 RPM | 169 .64 RPM |
bodymap2_lymph_node | 0 .51 RPM | 13 .65 RPM |
bodymap2_ovary | 0 .17 RPM | 43 .55 RPM |
bodymap2_prostate | 0 .17 RPM | 60 .43 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 1 .78 RPM |
bodymap2_testis | 0 .11 RPM | 31 .33 RPM |
bodymap2_thyroid | 0 .21 RPM | 148 .47 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 1 .04 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_1405 |
Gorilla gorilla | retro_ggor_1513 |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .09 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .03 RPM |
CEU_NA12004 | 0 .04 RPM |
CEU_NA12400 | 0 .04 RPM |
CEU_NA12751 | 0 .10 RPM |
CEU_NA12760 | 0 .09 RPM |
CEU_NA12827 | 0 .09 RPM |
CEU_NA12872 | 0 .05 RPM |
CEU_NA12873 | 0 .06 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .07 RPM |
FIN_HG00315 | 0 .08 RPM |
FIN_HG00321 | 0 .06 RPM |
FIN_HG00328 | 0 .09 RPM |
FIN_HG00338 | 0 .06 RPM |
FIN_HG00349 | 0 .03 RPM |
FIN_HG00375 | 0 .12 RPM |
FIN_HG00377 | 0 .05 RPM |
FIN_HG00378 | 0 .06 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .02 RPM |
GBR_HG00114 | 0 .05 RPM |
GBR_HG00119 | 0 .07 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .07 RPM |
GBR_HG00134 | 0 .11 RPM |
GBR_HG00137 | 0 .11 RPM |
GBR_HG00142 | 0 .11 RPM |
GBR_HG00143 | 0 .26 RPM |
TSI_NA20512 | 0 .06 RPM |
TSI_NA20513 | 0 .15 RPM |
TSI_NA20518 | 0 .03 RPM |
TSI_NA20532 | 0 .03 RPM |
TSI_NA20538 | 0 .14 RPM |
TSI_NA20756 | 0 .09 RPM |
TSI_NA20765 | 0 .15 RPM |
TSI_NA20771 | 0 .06 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .12 RPM |
YRI_NA18870 | 0 .03 RPM |
YRI_NA18907 | 0 .03 RPM |
YRI_NA18916 | 0 .04 RPM |
YRI_NA19093 | 0 .03 RPM |
YRI_NA19099 | 0 .05 RPM |
YRI_NA19114 | 0 .10 RPM |
YRI_NA19118 | 0 .04 RPM |
YRI_NA19213 | 0 .05 RPM |
YRI_NA19214 | 0 .10 RPM |
YRI_NA19223 | 0 .10 RPM |