RetrogeneDB ID: | retro_ptro_2470 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 6:113481741..113483027(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | KRT18 | ||
Ensembl ID: | ENSPTRG00000004996 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 85.85 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MSFTTRSTFSTNYRSLGSVQAPSYG-ARPVSSAASVYAGAGGSGSRISVSRSTSFRGGMGSGGLATGIAG |
MSFTTRSTFST.YRSLGSVQ.PSY..ARPVSS.ASVYAGAGGSGS..SVS.STSFRGG.GSG.LA.G.AG | |
Retrocopy | MSFTTRSTFSTYYRSLGSVQVPSYT<ARPVSSTASVYAGAGGSGSGNSVSCSTSFRGGLGSGALAAGMAG |
Parental | GLAGMGGIQNEKETMQSLNDRLASYLDRVRSLETENRRLESKIREHLEKKGPQVRDWSHYFKIIEDLRAQ |
GLAGMG.IQN.KE.MQSLN.RLASYLDR.RSLETEN..LESKIR.HLEKKGPQ.R.WSHYFK.I.DLRAQ | |
Retrocopy | GLAGMGSIQN-KEIMQSLNNRLASYLDRMRSLETENWKLESKIRKHLEKKGPQIRHWSHYFKTIQDLRAQ |
Parental | IFANTVDNARIVLQIDNARLAADDFRVKYETELAMRQSVENDIHGLRKVIDDTNITRLQLETEIEALKEE |
..ANTVDNARIVLQ.DNA.LAADDFRVKYETEL.M.QSVE.DIHGLRKV.DDTN.T.LQLETEIEALKEE | |
Retrocopy | NLANTVDNARIVLQTDNACLAADDFRVKYETELTMCQSVESDIHGLRKVTDDTNVTWLQLETEIEALKEE |
Parental | LLFMKKNHEEEVKGLQAQIASSGLTVEVDAPKSQDLAKIMADIRAQYDELARKNREELDKYWSQQIEEST |
LLFMKKNH.EEVKGLQ.QIASSGLTVEVDAPKSQD..KIMADI.AQY.EL.RKNREELDKYWSQQIEES. | |
Retrocopy | LLFMKKNH*EEVKGLQVQIASSGLTVEVDAPKSQDHSKIMADIQAQYNELSRKNREELDKYWSQQIEESS |
Parental | TVVTTQSAEVGAAETTLTELRRTVQSLEIDLDSMRNLKASLENSLREVEARYALQMEQLNGILLHLESEL |
TVVT.QS.EVGAAE.TLT.LRRTVQSLEIDLDSMRNLKASLENSLREVEARYALQMEQL.GILLHLESEL | |
Retrocopy | TVVTMQSTEVGAAEMTLTKLRRTVQSLEIDLDSMRNLKASLENSLREVEARYALQMEQLSGILLHLESEL |
Parental | AQTRAEGQRQAQEYEALLNIKVKLEAEIATYRRLLEDGEDFNLGDALDSSNSMQTIQKTTTRRIVDGKVV |
AQTRAEGQ.QAQE.EALLNIKVKLEAEIATY..LLEDG..F.L..ALDSS.SMQTIQKT..R.IVDGKVV | |
Retrocopy | AQTRAEGQHQAQEHEALLNIKVKLEAEIATYNNLLEDGKNFSLLNALDSSISMQTIQKTNSRWIVDGKVV |
Parental | SETNDTKVLRH |
SETN.TKVLRH | |
Retrocopy | SETNHTKVLRH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .07 RPM | 0 .34 RPM |
SRP007412_cerebellum | 0 .04 RPM | 3 .69 RPM |
SRP007412_heart | 0 .00 RPM | 1 .63 RPM |
SRP007412_kidney | 0 .00 RPM | 148 .80 RPM |
SRP007412_liver | 0 .00 RPM | 385 .90 RPM |
SRP007412_testis | 1 .16 RPM | 1 .26 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3645 |
Gorilla gorilla | retro_ggor_2462 |
Pongo abelii | retro_pabe_2992 |