RetrogeneDB ID: | retro_nleu_924 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397276.1:982993..984282(-) | ||
Located in intron of: | ENSNLEG00000003158 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | KRT18 | ||
Ensembl ID: | ENSNLEG00000017732 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 79.21 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 1 |
Parental | MSFTTRSTFSTNYRSLGSVQAPSYGARPVSSAASVYAGAGGSGSRISVSRSTSFRGGMGSGGLAAGIAGG |
MSFTTRS..STNY.S.GS.Q.PSYG..PVSS...VY.G..GSGSRIS.S.STSF.G..GS.GLA.G.AGG | |
Retrocopy | MSFTTRSALSTNYPSPGSIQVPSYGTWPVSSTTNVYTGTEGSGSRISMSCSTSF*GCLGSRGLARGMAGG |
Parental | LAGVGGIQNEKETMQSLN-DRLASYLDRVRSLETENRRLESKIREHLEKKGPQVRDWSHYFKIIEDLRAQ |
LAG.GGIQNEKETMQSL..D.LASYLDRVRS.ET.N...ESKI.EHLEK.GPQVRDW.HYFK.IEDLRAQ | |
Retrocopy | LAGMGGIQNEKETMQSLK<DHLASYLDRVRSPETKNWKVESKIWEHLEKTGPQVRDWVHYFKTIEDLRAQ |
Parental | IFANTVDNARIVLQIDNARLAADDFRVKYETELAMRQSVENDIHGLRKVIDDTNVTRLQLETEIEALKEE |
IFANTVDN..IVLQIDNA.LAAD.FRVKY.TELA..QSVE..I.GL.KV.DDTNVTRLQL.TEIE.LKEE | |
Retrocopy | IFANTVDNVHIVLQIDNAHLAADGFRVKYDTELAPCQSVESNIYGLCKVTDDTNVTRLQLKTEIETLKEE |
Parental | LLFMKKNHEEEVKGLQAQIASSGLTVEVDAPKSQDLAKIMADIRAQYDELARKNREELDKYWSQQIEEST |
LL.MKKNHEEEVKGL.AQI.SSGL.VEVDAPKSQDLAKIMADI.AQYD.LA.KN.E.LDKYWSQQI.EST | |
Retrocopy | LLLMKKNHEEEVKGL*AQIVSSGLIVEVDAPKSQDLAKIMADIWAQYDKLAWKN*EGLDKYWSQQIKEST |
Parental | TVVTTQSAEVGAAETTLT--ELRRTVQSLEIDLDSMRNLKASLENSLREVEARYALQMEQLNGILLHLES |
TVVT.Q.A.VGA.E..L...EL..TVQSLEID..SMRNLKASLENSLREVEA.Y.LQMEQL.GILLHLE. | |
Retrocopy | TVVTIQLAKVGAVEVMLSTDEL*HTVQSLEID--SMRNLKASLENSLREVEAWYTLQMEQLSGILLHLEL |
Parental | ELAQTRAEGQRQAQEYEALLNIKVKLEAEIATYRRLLEDGEDFNLGDALDSSNSMQTIQKTTTRRIVDGK |
EL.QT.AEG..QAQE.EALLNIKVKLE.EIA.Y.RL.ED..DFNLGDALDSSNSMQTIQKTTT..IVDGK | |
Retrocopy | ELTQTWAEGPHQAQE*EALLNIKVKLEDEIAMYHRLPEDIKDFNLGDALDSSNSMQTIQKTTTCQIVDGK |
Parental | VVSETNDTKVLRH |
.VSETNDTKVLRH | |
Retrocopy | MVSETNDTKVLRH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |