RetrogeneDB ID: | retro_ptro_1977 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 4:40054633..40055772(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | KRT18 | ||
Ensembl ID: | ENSPTRG00000004996 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 85.3 % |
Parental protein coverage: | 88.37 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | MSFTTRSTFSTNYRSLGSVQAPSYGARPVSSAASVYAGAGGSGSRISVSRSTSFRGGMGSGGLATGIAGG |
MSFT.RSTFST.Y.SL.SVQ.PSYGARPVSS.AS.YAGAGGSGS.ISVSRSTSFR.G.G..GLA.G.AG. | |
Retrocopy | MSFTIRSTFSTDYWSLSSVQVPSYGARPVSSLASIYAGAGGSGSWISVSRSTSFRLGIGFQGLAAGMAGD |
Parental | LAGMGGIQNEKETMQSLNDRLASYLDRVRSLETENRRLESKIREHLEKKGPQVRDWSHYFKIIEDLRAQI |
LAGMGGIQN.KE.MQSLNDRLASYLDRVRSLETEN..LESKIREHLEKKG.QVR.WSHYFK.IEDLRAQI | |
Retrocopy | LAGMGGIQNYKEAMQSLNDRLASYLDRVRSLETENWKLESKIREHLEKKGLQVRVWSHYFKTIEDLRAQI |
Parental | FANTVDNARIVLQIDNARLAADDFRVKYETELAMRQSVENDIHGLRKVIDDTNITRLQLETEIEALKEEL |
FANTVDNA.I.L.I.NARLAA.DF.VKYETELA..QSV.N.I.GL.KV.DDTN.T.LQLETEIEALKEEL | |
Retrocopy | FANTVDNAFIFL*INNARLAANDFGVKYETELALCQSVKNYIQGLCKVTDDTNVTWLQLETEIEALKEEL |
Parental | LFMKKNHEEEVKGLQAQIASSGLTVEVDAPKSQDLAKIMADIRAQYDELARKNREELDKYWSQQIEE-ST |
.FMKKNHE..VKGLQAQIASSGLTVEVDAPKSQDLA.I.ADI.AQYDELA.KN.E.LDKYWSQQIEE..T | |
Retrocopy | VFMKKNHED*VKGLQAQIASSGLTVEVDAPKSQDLARIIADIQAQYDELAWKN*EDLDKYWSQQIEE<ET |
Parental | TVVTTQSAEVGAAETTLTELRRTVQSLEIDLDSMRNLKASLENSLREVEARYALQMEQLNGILLHLESEL |
TVVTTQ.A.VGAAE..LTELR.TVQSLEIDLDSMRNLKASLENSLREVEARY.LQMEQLNGILLHLESEL | |
Retrocopy | TVVTTQTAKVGAAEMPLTELRHTVQSLEIDLDSMRNLKASLENSLREVEARYTLQMEQLNGILLHLESEL |
Parental | AQTRAEGQRQAQEYEALLNIKVKLEAEIATY |
AQTRAEGQ.QAQE.EALLNIKVKLEAEIATY | |
Retrocopy | AQTRAEGQCQAQE*EALLNIKVKLEAEIATY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 0 .34 RPM |
SRP007412_cerebellum | 0 .00 RPM | 3 .69 RPM |
SRP007412_heart | 0 .00 RPM | 1 .63 RPM |
SRP007412_kidney | 0 .05 RPM | 148 .80 RPM |
SRP007412_liver | 0 .07 RPM | 385 .90 RPM |
SRP007412_testis | 0 .11 RPM | 1 .26 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2922 |
Gorilla gorilla | retro_ggor_2024 |
Pongo abelii | retro_pabe_2431 |