RetrogeneDB ID: | retro_nleu_415 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397264.1:20529212..20530494(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | KRT18 | ||
Ensembl ID: | ENSNLEG00000017732 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 83.14 % |
Parental protein coverage: | 99.77 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 4 |
Parental | SFTTRSTFSTNYRSLGSVQAPSYGARPVSSAASVYAGAGGSGSRISVSRSTSFR-GGMGSGGLAAGIAGG |
SFTT.STF.TNYRSLG..Q.PSYG..PVSS.ASVYAG.GG.GSRIS...STSFR..G.GSGGLAAG..GG | |
Retrocopy | SFTTHSTFFTNYRSLGCIQLPSYGNQPVSSVASVYAGVGGLGSRISTFWSTSFR<DGLGSGGLAAGMTGG |
Parental | LAGVGGIQNEKETMQSLNDRLASYLDRVRSLETENRRLESKIREHLEKKGPQVRDWSHYFKIIEDLRAQI |
LAG..G.QNEKETMQSLN..LASYLDRVRSLETEN..LESKI.EHLE.KGPQVRDW.HYFK..E.LRAQI | |
Retrocopy | LAGTAGMQNEKETMQSLNNCLASYLDRVRSLETEN*KLESKIWEHLERKGPQVRDWGHYFKTFEVLRAQI |
Parental | FANTVDNARIVLQIDNARLAADDFRVKYETELAMRQSVENDIHGLRKVIDDTNVTRLQLETEIEALKEEL |
FANTVDN..IVLQIDNA.LAADDFR.KYETELAMRQSVE..IHGL.KVIDDTNVTRLQLETEIEALKEEL | |
Retrocopy | FANTVDNTCIVLQIDNAHLAADDFRIKYETELAMRQSVESNIHGLHKVIDDTNVTRLQLETEIEALKEEL |
Parental | LFMKKNHEEEVKGLQAQIASSGLTVEVDAPKSQDLAKIMADIR-AQYDELARKNREELDKYWSQQIEEST |
LFMK.NHEEEVKGLQAQIASSGLT.E.DAPKSQDL.KIMADIR..QYDELA.KN.E.LDKYWSQQIEEST | |
Retrocopy | LFMK-NHEEEVKGLQAQIASSGLTMEIDAPKSQDLTKIMADIR<TQYDELAGKN*EKLDKYWSQQIEEST |
Parental | TVVT-TQSAEVGAAETTLTELRRTVQSLEIDLDSMRNLKASLENSLREVEARYALQMEQLNGILLHLESE |
TVVT.TQS..VGAAE..L.ELR.TV.SLEIDLD.MRNLKASLENSLREVEARYALQMEQ.NGILLHLESE | |
Retrocopy | TVVT<TQSTKVGAAEMMLMELRYTVRSLEIDLDWMRNLKASLENSLREVEARYALQMEQFNGILLHLESE |
Parental | LAQTRAEGQRQAQEYEALLNIKVKLEAEIATYRRLLEDGEDFNLG-DALDSSNSMQTIQKTTTRRIVDGK |
L..T.AE.QRQAQE.EALLNIKVKLEAE.ATYRRLLED.EDF.LG..ALDS.NSMQTIQKTTT...VDGK | |
Retrocopy | LVET*AERQRQAQE*EALLNIKVKLEAEMATYRRLLEDSEDFSLG>VALDSPNSMQTIQKTTTLQTVDGK |
Parental | VVSETNDTKVLRH |
V.SET.DTKVLRH | |
Retrocopy | VMSETDDTKVLRH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |