RetrogeneDB ID: | retro_hsap_4238 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 9:30799465..30800746(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000226246 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | KRT18 | ||
Ensembl ID: | ENSG00000111057 | ||
Aliases: | KRT18, CYK18, K18 | ||
Description: | keratin 18 [Source:HGNC Symbol;Acc:6430] |
Percent Identity: | 82.91 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 3 |
Parental | MSFTTRSTFSTNYRSLGSVQAPSYGAR-PVSSAASVYAGAGGSGSRISVSRSTSFRGGMGSGGLATGIAG |
MSFTT.STFSTNY.SLGSV..PSYGA....SS.ASVYAG.G.S.S.ISVSRSTSF.GGMGSG.LA.G.A. | |
Retrocopy | MSFTTCSTFSTNYGSLGSV*VPSYGAQ<AASSVASVYAGKG-SASWISVSRSTSFLGGMGSGDLAAGMAR |
Parental | GLAGMGGIQNEKETMQSLNDRLASYLDRVRSLETENRRLESKIREHLEKKGPQVRDWSHYFKIIEDLRAQ |
GLAGMGGIQN.KETMQ.LND.LASYLDRVRSLET..R.LESKI.EHLEKKGPQVRD.SHYFK.I.DLRAQ | |
Retrocopy | GLAGMGGIQNKKETMQDLNDGLASYLDRVRSLETNKRKLESKIQEHLEKKGPQVRD*SHYFKTIQDLRAQ |
Parental | IFANTVDNARIVLQIDNARLAADDFRVKYETELAMRQSVENDIHGLRKVIDDTNITRLQLETEIEALKEE |
IFANT.DN..IVLQ.DNA.LAADDFRVKYETEL.MRQSVENDIHGL.KV.D.TN.TR.QLET..EALKEE | |
Retrocopy | IFANTADNVPIVLQMDNAGLAADDFRVKYETELVMRQSVENDIHGLCKVMDGTNVTRMQLETQFEALKEE |
Parental | LLFMKKNHEEEVKGLQAQIA-SSGLTVEVDAPKS-QDLAKIMADIRAQYDELARKNREELDKYWSQQIEE |
LL.MKKNHEE.VKG.QAQIA.SSGLTV..DAPKS.QDLAKIMADIRAQYD.LA.KNR.ELDKYWS..IEE | |
Retrocopy | LLLMKKNHEEQVKGRQAQIA<SSGLTVDADAPKS<QDLAKIMADIRAQYDQLAQKNR*ELDKYWSRPIEE |
Parental | STTVVTTQSAEVGAAETTLTELRRTVQSLEIDLDSMRNLKASLENSLREVEARYALQMEQLNGILLHLES |
STTVVTTQSAEVG.AE.TLTEL..TV.SL.IDLDSMRNLKASLENSLREVEARYALQMEQLNGILLHLES | |
Retrocopy | STTVVTTQSAEVGPAEVTLTELLCTVESL*IDLDSMRNLKASLENSLREVEARYALQMEQLNGILLHLES |
Parental | ELAQTRAEGQRQAQEYEALLNIKVKLEAEIATYRRLLEDGEDFNLGDALDSSNSMQTIQKTTTRRIVDGK |
ELAQT.AEG.RQAQEYE.LLNI.VKLEAEIATY..LLEDGEDFNLGD.LDSSNSMQTIQ...TR.IV.GK | |
Retrocopy | ELAQTWAEG*RQAQEYESLLNIRVKLEAEIATYHHLLEDGEDFNLGDSLDSSNSMQTIQ-NATRQIVNGK |
Parental | VVSETNDTKVLRH |
VVSETN.TKV.R. | |
Retrocopy | VVSETNNTKVPRY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 8 .95 RPM |
bodymap2_adrenal | 0 .00 RPM | 10 .71 RPM |
bodymap2_brain | 0 .00 RPM | 1 .24 RPM |
bodymap2_breast | 0 .00 RPM | 37 .70 RPM |
bodymap2_colon | 0 .00 RPM | 68 .51 RPM |
bodymap2_heart | 0 .00 RPM | 3 .58 RPM |
bodymap2_kidney | 0 .00 RPM | 132 .71 RPM |
bodymap2_liver | 0 .00 RPM | 164 .76 RPM |
bodymap2_lung | 0 .00 RPM | 169 .64 RPM |
bodymap2_lymph_node | 0 .00 RPM | 13 .65 RPM |
bodymap2_ovary | 0 .00 RPM | 43 .55 RPM |
bodymap2_prostate | 0 .00 RPM | 60 .43 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 1 .78 RPM |
bodymap2_testis | 0 .00 RPM | 31 .33 RPM |
bodymap2_thyroid | 0 .00 RPM | 148 .47 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 1 .04 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_2881 |
Pongo abelii | retro_pabe_3400 |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .02 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .03 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .02 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .02 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .05 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .05 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |