RetrogeneDB ID: | retro_itri_571 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393301.1:17640810..17641190(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SUB1 | ||
Ensembl ID: | ENSSTOG00000019364 | ||
Aliases: | None | ||
Description: | SUB1 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:19985] |
Percent Identity: | 84.38 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MPKSKELVSSSSSGSDSDSEVEKKLKRKKQVAPEKPVKKQKTGETSRALSSSKQSSSSRDDNMFQIGKMR |
MPK.K.LVSS.S.G.DSDSEVEKKLKRKKQV.PEK.VKKQKT.ET.RALSS.KQSSSSR.DNMFQ.GKMR | |
Retrocopy | MPKLKLLVSSCSLGCDSDSEVEKKLKRKKQVSPEKSVKKQKTVETLRALSSCKQSSSSRNDNMFQTGKMR |
Parental | YVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLNPEQWS-QLKEQISDIDDAVRKL |
Y.SV.DFKGKVLIDIREYWMDPEGEMKPGRK.ISLNPEQWS.Q.KEQISDID.A..KL | |
Retrocopy | YLSVWDFKGKVLIDIREYWMDPEGEMKPGRKCISLNPEQWS<QWKEQISDIDGAGSKL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000018879 | 5 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000007611 | 5 retrocopies | |
Gorilla gorilla | ENSGGOG00000027033 | 3 retrocopies | |
Loxodonta africana | ENSLAFG00000011006 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000007770 | 4 retrocopies | |
Microcebus murinus | ENSMICG00000014535 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000013685 | 6 retrocopies | |
Monodelphis domestica | ENSMODG00000020410 | 3 retrocopies | |
Mustela putorius furo | ENSMPUG00000015185 | 2 retrocopies | |
Mus musculus | ENSMUSG00000022205 | 4 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000006262 | 5 retrocopies | |
Otolemur garnettii | ENSOGAG00000009012 | 6 retrocopies | |
Pongo abelii | ENSPPYG00000015379 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000050563 | 12 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000014986 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000019364 | 2 retrocopies |
retro_itri_570, retro_itri_571 ,
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