RetrogeneDB ID: | retro_dnov_400 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | GeneScaffold_4397:156753..157067(-) | ||
Located in intron of: | ENSDNOG00000004558 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SUB1 | ||
Ensembl ID: | ENSDNOG00000007611 | ||
Aliases: | None | ||
Description: | SUB1 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:19985] |
Percent Identity: | 83.96 % |
Parental protein coverage: | 82.68 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | KKLKRKKQIPPEKPVKKQKT-GETSRALSSSKQSSSSRDDNMFQIGKMRYVSVRDFKGKVLIDIREYWMD |
K.LKRKKQ...EKPVKKQK..GETSR.LSS.KQSSS.R.DNMFQIGKMRY.S.RDFKGKVL.DIRE.W.D | |
Retrocopy | KNLKRKKQVILEKPVKKQKM<GETSRVLSSAKQSSSCREDNMFQIGKMRYISIRDFKGKVLTDIRE*WID |
Parental | PEGEMKPGRKGISLNPEQWSQLKEQISDIDDAVRKL |
PEGEMKPGRKGISLN.EQWSQLKEQISD.DDAVRKL | |
Retrocopy | PEGEMKPGRKGISLNSEQWSQLKEQISDTDDAVRKL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 82 .65 RPM |
SRP012922_cerebellum | 0 .00 RPM | 62 .82 RPM |
SRP012922_heart | 0 .00 RPM | 75 .18 RPM |
SRP012922_kidney | 0 .00 RPM | 115 .27 RPM |
SRP012922_liver | 0 .00 RPM | 51 .24 RPM |
SRP012922_lung | 0 .00 RPM | 114 .70 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 49 .85 RPM |
SRP012922_spleen | 0 .00 RPM | 203 .97 RPM |