RetrogeneDB ID: | retro_mmus_1118 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 13:72472201..72472569(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Sub1 | ||
Ensembl ID: | ENSMUSG00000022205 | ||
Aliases: | Sub1, AI842364, P15, P9, Pc4, Rpo2tc1 | ||
Description: | SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811] |
Percent Identity: | 85.16 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MPKSKELVSSSSSGSDSDSEVEK-KLKRKKQAVPEKPVKKQKPGETSRALASSKQSSSSRDDNMFQIGKM |
MPKSKELV.SSS....SDSEVEK.KLKRKKQ.VPEKP.KKQKPGETSRAL.SSKQSSSSRDDNM...GKM | |
Retrocopy | MPKSKELVFSSS----SDSEVEK<KLKRKKQVVPEKPLKKQKPGETSRALTSSKQSSSSRDDNMPHVGKM |
Parental | RYVSVRDFKGKILIDIREYWMDSEGEMKPGRKGISLNMEQWSQLKEQISDIDDAVRKL |
R..SV..FKGKILIDIREYW.DSEGEMKPGRKGISLNMEQWSQLKEQ.S.IDDAVRKL | |
Retrocopy | RNISVQEFKGKILIDIREYWVDSEGEMKPGRKGISLNMEQWSQLKEQLSGIDDAVRKL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 139 .31 RPM |
SRP007412_cerebellum | 0 .00 RPM | 55 .84 RPM |
SRP007412_heart | 0 .00 RPM | 30 .23 RPM |
SRP007412_kidney | 0 .00 RPM | 39 .71 RPM |
SRP007412_liver | 0 .00 RPM | 43 .50 RPM |
SRP007412_testis | 0 .00 RPM | 61 .52 RPM |