RetrogeneDB ID: | retro_rnor_1692 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 2:227776710..227777085(-) | ||
Located in intron of: | ENSRNOG00000048272 | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000046624 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SUB1 | ||
Ensembl ID: | ENSRNOG00000050563 | ||
Aliases: | Sub1, Rpo2tc1 | ||
Description: | Activated RNA polymerase II transcriptional coactivator p15 [Source:UniProtKB/Swiss-Prot;Acc:Q63396] |
Percent Identity: | 87.5 % |
Parental protein coverage: | 99.21 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MPKSKELVSSSSSGSDSDSEVEKKLKRKKQVVPEKPVKKQKPGESSRALASSKQSSSSRDDN-MFQIGKM |
.PKSKELVSSSSSGSDSDSEV.K.LKRKKQVVPEKPVKKQKPGESSRALASSKQS.SS..D...F..GK. | |
Retrocopy | VPKSKELVSSSSSGSDSDSEVGKQLKRKKQVVPEKPVKKQKPGESSRALASSKQS-SSSRDD>TFPTGKV |
Parental | RYVSVRDFKGKILI-DIREYWMDSEGEMKPGRKGISLNMEQWSQLKEQISDIDDAVRK |
RYVSVRDFKGKIL...IREYWMDSEGEMKPGRKGISLNMEQWSQLKEQISD.DDAVRK | |
Retrocopy | RYVSVRDFKGKILM<GIREYWMDSEGEMKPGRKGISLNMEQWSQLKEQISDVDDAVRK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 249 .70 RPM |
SRP017611_kidney | 0 .00 RPM | 67 .90 RPM |
SRP017611_liver | 0 .00 RPM | 35 .90 RPM |