RetrogeneDB ID: | retro_dnov_2156 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_51630:7699..7952(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SUB1 | ||
Ensembl ID: | ENSDNOG00000007611 | ||
Aliases: | None | ||
Description: | SUB1 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:19985] |
Percent Identity: | 70.11 % |
Parental protein coverage: | 67.72 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | TGETSRALSSSKQSSSSRDD-NMFQIGKMRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLNPEQW |
TGETSRAL.S.KQ..SS..D.NMF.IGKMR.V...D..G.VL.DIREYWM...GEMKPGRKGIS.N.E.W | |
Retrocopy | TGETSRALLSCKQ--SSSRD>NMFHIGKMRIVRGWDVIGRVLTDIREYWMIQKGEMKPGRKGIS*NSE*W |
Parental | SQLKEQISDIDDAVRKL |
.QL.EQISD.DDAV.KL | |
Retrocopy | NQLVEQISDTDDAVKKL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 82 .65 RPM |
SRP012922_cerebellum | 0 .00 RPM | 62 .82 RPM |
SRP012922_heart | 0 .00 RPM | 75 .18 RPM |
SRP012922_kidney | 0 .00 RPM | 115 .27 RPM |
SRP012922_liver | 0 .00 RPM | 51 .24 RPM |
SRP012922_lung | 0 .00 RPM | 114 .70 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 49 .85 RPM |
SRP012922_spleen | 0 .00 RPM | 203 .97 RPM |