RetrogeneDB ID: | retro_rnor_420 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 1:16539455..16539841(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SUB1 | ||
Ensembl ID: | ENSRNOG00000050563 | ||
Aliases: | Sub1, Rpo2tc1 | ||
Description: | Activated RNA polymerase II transcriptional coactivator p15 [Source:UniProtKB/Swiss-Prot;Acc:Q63396] |
Percent Identity: | 71.54 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MPKSKELVSSSSSGSDSDSEVEKKLK-RKKQVVPEKPVKKQK-PGESSRALASSKQSSSSRDDNMFQIGK |
MPKSKE.VSSSSSGS.SD.EV......RKKQVVPEK.VKKQK.PGE..RALASS.QSS....D.M.Q.GK | |
Retrocopy | MPKSKEHVSSSSSGSGSDREVXXXXX*RKKQVVPEKLVKKQK>PGETCRALASSEQSSRPGNDDMPQLGK |
Parental | MRYVSVRDFKGKILIDIREYWMDSEGEMKPGRKGISLNMEQW-SQLKEQISDIDDAVRKL |
M..VSV.DFKGK.LI.I.EY.MDSEG..KPGRK.ISLN..Q..SQLKEQISD.D.AVRKL | |
Retrocopy | MGSVSVQDFKGKLLIGITEYCMDSEGDVKPGRKVISLNTKQL>SQLKEQISDVDAAVRKL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 249 .70 RPM |
SRP017611_kidney | 0 .00 RPM | 67 .90 RPM |
SRP017611_liver | 0 .00 RPM | 35 .90 RPM |