RetrogeneDB ID: | retro_rnor_2986 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | X:135701083..135701384(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SUB1 | ||
Ensembl ID: | ENSRNOG00000050563 | ||
Aliases: | Sub1, Rpo2tc1 | ||
Description: | Activated RNA polymerase II transcriptional coactivator p15 [Source:UniProtKB/Swiss-Prot;Acc:Q63396] |
Percent Identity: | 80.58 % |
Parental protein coverage: | 79.53 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MPKSKELVSSSSSGSDSDSEVEK-KLKRKKQVVPEKP-VKKQKPGESSRALASSKQSSSSRDDNMFQIGK |
.PKSKELVSS.SSGSDSD...EK.KL.RK.QVV..K..VKKQKP.E.SRA.ASSKQSS.SRDDN.FQIGK | |
Retrocopy | LPKSKELVSSGSSGSDSDEKLEK<KLTRKNQVVIDKT<VKKQKPCETSRAPASSKQSSHSRDDNTFQIGK |
Parental | MRYVSVRDFKGKILIDIREYWMDSEGEMKPGRK |
.RYVSV.DFKGK.LIDIREYWMDSEGEMKPGRK | |
Retrocopy | LRYVSVEDFKGKLLIDIREYWMDSEGEMKPGRK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 249 .70 RPM |
SRP017611_kidney | 0 .00 RPM | 67 .90 RPM |
SRP017611_liver | 0 .00 RPM | 35 .90 RPM |