RetrogeneDB ID: | retro_cfam_1536 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 33:29025906..29026242(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCAFG00000018879 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 75. % |
Parental protein coverage: | 79.17 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | VSCKRASRRQFGRESGAMPKSKELVSSSS-SGSDSDSEVDKKLKRKKQVTPEKPVKKQKTGETSRALSSS |
V.CK.ASRRQFG....A.PKSKE.V.SSS.SGSDSDSEVDK.LK..KQVTPEKPVKKQKT.ETSRAL.SS | |
Retrocopy | VRCKQASRRQFGCRNRARPKSKEPV-SSS>SGSDSDSEVDK-LKKEKQVTPEKPVKKQKTDETSRALASS |
Parental | KQSSSSRDDNM-FQIGKMRYVSVRDFKGKVLIDIREYWMDPEGEMK |
.Q.SSSR.....F..GKMRY.SVRDF..KVL.DIR.YWMDPEGEMK | |
Retrocopy | EQTSSSRHEKI<FR*GKMRYISVRDFRRKVLSDIRQYWMDPEGEMK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 101 .97 RPM |
SRP017611_brain | 0 .00 RPM | 60 .74 RPM |
SRP017611_kidney | 0 .00 RPM | 69 .34 RPM |
SRP017611_liver | 0 .00 RPM | 18 .93 RPM |