RetrogeneDB ID: | retro_rnor_2721 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 9:16083816..16084117(-) | ||
Located in intron of: | ENSRNOG00000019195 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SUB1 | ||
Ensembl ID: | ENSRNOG00000050563 | ||
Aliases: | Sub1, Rpo2tc1 | ||
Description: | Activated RNA polymerase II transcriptional coactivator p15 [Source:UniProtKB/Swiss-Prot;Acc:Q63396] |
Percent Identity: | 72.82 % |
Parental protein coverage: | 80.31 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | LKRKKQVVPEKPVKKQKPGES-SRALASSKQSSSSRDDNMFQIGKMRYVSVRDFKGKILIDIREYWMDSE |
LKRK.QVVPEKPVKKQKPGE.......S...S.S..DDNMFQ.GKMR.VSV.DFKGK.LIDIREYW.D.E | |
Retrocopy | LKRKEQVVPEKPVKKQKPGET>RALASSEQSSRST-DDNMFQTGKMRSVSVQDFKGKLLIDIREYWVDLE |
Parental | GEMKPGRKGISLNMEQWSQLKEQISDIDDAVRK |
G..K.G..G.SLNMEQWSQLKEQI.DID.AVRK | |
Retrocopy | GDTKAG-GGVSLNMEQWSQLKEQICDIDAAVRK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 249 .70 RPM |
SRP017611_kidney | 0 .14 RPM | 67 .90 RPM |
SRP017611_liver | 0 .00 RPM | 35 .90 RPM |