Parental gene: | ENSCAFG00000018879 |
| Aliases: | None |
| Description: | None |
| Organism: | Dog (Canis familiaris) |
| Coordinates: | 4:74934028..74951602(-) |
>ENSCAFG00000018879
GTCAGTTGCAAGCGAGCGAGCAGAAGGCAGTTCGGCCGCGAGAGTGGAGCAATGCCTAAATCAAAGGAACTTGTTTCTTC
AAGCTCTTCTGGCAGCGATTCTGACAGTGAGGTTGACAAAAAGTTAAAGAGGAAAAAGCAAGTTACGCCAGAGAAACCTG
TGAAGAAGCAAAAGACTGGCGAAACTTCAAGAGCCTTGTCATCCTCTAAGCAGAGCAGCAGCAGCAGAGATGATAACATG
TTTCAGATTGGGAAAATGAGGTACGTCAGTGTTCGGGACTTTAAAGGGAAAGTCCTAATTGATATTAGAGAATATTGGAT
GGATCCAGAAGGTGAAATGAAACCTGGAAGAAAAGGTATTTCTTTAAATCCTGAGCAATGGAGCCAGCTGAAGGAACAGA
TTTCTGACATTGATGATGCAGTAAGAAAACTGTAA
GTCAGTTGCAAGCGAGCGAGCAGAAGGCAGTTCGGCCGCGAGAGTGGAGCAATGCCTAAATCAAAGGAACTTGTTTCTTC
AAGCTCTTCTGGCAGCGATTCTGACAGTGAGGTTGACAAAAAGTTAAAGAGGAAAAAGCAAGTTACGCCAGAGAAACCTG
TGAAGAAGCAAAAGACTGGCGAAACTTCAAGAGCCTTGTCATCCTCTAAGCAGAGCAGCAGCAGCAGAGATGATAACATG
TTTCAGATTGGGAAAATGAGGTACGTCAGTGTTCGGGACTTTAAAGGGAAAGTCCTAATTGATATTAGAGAATATTGGAT
GGATCCAGAAGGTGAAATGAAACCTGGAAGAAAAGGTATTTCTTTAAATCCTGAGCAATGGAGCCAGCTGAAGGAACAGA
TTTCTGACATTGATGATGCAGTAAGAAAACTGTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_brain | 60 .74 RPM |
| SRP017611_kidney | 69 .34 RPM |
| SRP017611_liver | 18 .93 RPM |
| SRP012049_cerebellum | 101 .97 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000006238 | ortholog_one2one | 2 retrogenes | |
| Callithrix jacchus | ENSCJAG00000018718 | possible_ortholog | 2 retrogenes | |
| Cavia porcellus | ENSCPOG00000005584 | possible_ortholog | 4 retrogenes | |
| Dasypus novemcinctus | ENSDNOG00000007611 | possible_ortholog | 5 retrogenes | |
| Dipodomys ordii | ENSDORG00000013916 | possible_ortholog | 2 retrogenes | |
| Felis catus | ENSFCAG00000006012 | ortholog_one2one | 2 retrogenes | |
| Homo sapiens | ENSG00000113387 | possible_ortholog | 2 retrogenes | |
| Gorilla gorilla | ENSGGOG00000027033 | ortholog_one2many | 3 retrogenes | |
| Loxodonta africana | ENSLAFG00000011006 | possible_ortholog | 1 retrogene | |
| Macropus eugenii | ENSMEUG00000007770 | ortholog_one2many | 4 retrogenes | |
| Microcebus murinus | ENSMICG00000014535 | possible_ortholog | 2 retrogenes | |
| Myotis lucifugus | ENSMLUG00000013685 | possible_ortholog | 6 retrogenes | |
| Macaca mulatta | ENSMMUG00000011470 | possible_ortholog | 2 retrogenes | |
| Monodelphis domestica | ENSMODG00000020410 | ortholog_one2many | 3 retrogenes | |
| Mustela putorius furo | ENSMPUG00000015185 | ortholog_one2many | 2 retrogenes | |
| Mus musculus | ENSMUSG00000022205 | ortholog_one2many | 4 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000006262 | ortholog_one2one | 5 retrogenes | |
| Otolemur garnettii | ENSOGAG00000009012 | possible_ortholog | 6 retrogenes | |
| Ochotona princeps | ENSOPRG00000012887 | ortholog_one2one | 2 retrogenes | |
| Pongo abelii | ENSPPYG00000015379 | possible_ortholog | 2 retrogenes | |
| Rattus norvegicus | ENSRNOG00000050563 | ortholog_one2many | 12 retrogenes | |
| Sarcophilus harrisii | ENSSHAG00000014986 | ortholog_one2many | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000019364 | possible_ortholog | 2 retrogenes | |
| Tarsius syrichta | ENSTSYG00000014069 | possible_ortholog | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cfam_215 | 99.24 | 91.67 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cfam_1266 | 91.67 | 99.31 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cfam_1536 | 75.00 | 79.17 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_cfam_1916 | 97.90 | 99.31 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_cfam_2010 | 85.52 | 98.61 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCAFG00000018879 retrocopies