Parental gene:

ENSCAFG00000003953

Aliases:None
Description:None
Organism:Dog (Canis familiaris)
Coordinates:16:8508179..8528497(+)


>ENSCAFG00000003953
ACAGTAATGGCGGAGGCTGCAGCTCCCGGAACAACAGCCACAACATCAGGAGCAGGAGCGGCAGCGGCGGCGGCGGCGGC
CTCCCCCACCCCTATCCCCACAGTCACCTCCCCGTCCTCGGGGGCGGGGGGCGGGGGAGGCGGCGGCGGCGGCGGCGGCG
GCGGCGATTTTAACATGTGGCTTTTTAAAAAATCATGTAAGTATTTCATGCACGGGGTTTGTAAAGAAGGAGATAACTGT
CGCTATTCGCATGACCTCTCTGACAGTCCTTATGGTGTAGTGTGCAAGTATTTTCAGCGAGGATACTGTATTTACGGAGA
CCGCTGCAGATATGAACATAGCAAGCCATTGAAACAGGAAGAAGTGACTGCTGCAGATCTAACTGCAAAATCATCTCTTG
CTGCTTCCTCAAGTCTCTCATCGGGAGTTGGACCAGTTGTTGAAATGAATATGGGTGAAGCAGAGTCCAGAAATTCAAAC
TTTGCTACTGTCGGTGCAGGTTCAGAAGACTGGGTGAATGCCATTGAGTTTGTTCCCGGGCAGCCCTACTGTGGCCGTAC
TGCCCCTTCCTGCACTGAAGCACCCCCACAGGGCTCTGTGACCAAGGAAGAATCTGAGAAAGAACAGACAGCAGTGGAAA
CCAAGAAGCAGCTTTGCCCCTATGCTGCAGTGGGAGAGTGCCGGTATGGGGAGAACTGTGTATATCTCCACGGAGACTCG
TGTGACATGTGTGGGCTGCAGGTCCTCCATCCAATGGATGCCGCCCAGAGATCACAACATATAAAATCTTGCATTGAGGC
CCATGAGAAGGACATGGAGCTCTCATTTGCTGTCCAACGCAGTAAGGACATGGTGTGTGGGATCTGCATGGAGGTGGTCT
ATGAGAAAGCCAACCCCAGTGAGCGTCGCTTTGGGATTCTCTCCAACTGCAACCACACTTACTGTCTCAAGTGTATTCGC
AAGTGGAGGAGTGCTAAGCAATTTGAGAGCAAGATCATAAAGTCCTGCCCCGAATGCCGGATCACATCTAACTTTGTCAT
TCCAAGTGAGTACTGGGTGGAGGAGAAAGAAGAGAAGCAGAAACTCATTCAGAAATACAAGGAGGCAATGAGCAACAAGG
CGTGCAGGTATTTTGATGAAGGACGTGGGAGCTGCCCATTTGGAGGGAACTGTTTTTACAAGCATGCGTACCCTGATGGC
CGTAGAGAGGAGCCACAGAGACAGAAAGTGGGAACATCAAGCAGATACCGGGCCCAACGAAGGAACCACTTCTGGGAGCT
CATTGAGGAAAGAGAGAACAGCAACCCCTTTGACAACGAAGAAGAGGAGGTTGTCACCTTTGAGCTGGGCGAGATGTTGC
TTATGCTTTTGGCTGCAGGTGGGGACGACGACCTGACAGACTCTGAAGACGAGTGGGACTTGTTTCATGATGAGCTGGAA
GATTTTTATGACTTGGATCTATAG

Library Parental gene expression (RPM)
SRP017611_brain 32 .07 RPM
SRP017611_kidney 30 .38 RPM
SRP017611_liver 12 .18 RPM
SRP012049_cerebellum 62 .83 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000008306 possible_ortholog 2 retrogenes
retro_btau_401, retro_btau_943,
Choloepus hoffmanni ENSCHOG00000011015 ortholog_one2many 3 retrogenes
retro_chof_173, retro_chof_2357, retro_chof_89,
Callithrix jacchus ENSCJAG00000013474 ortholog_many2many 2 retrogenes
retro_cjac_210, retro_cjac_2991,
Cavia porcellus ENSCPOG00000000948 possible_ortholog 1 retrogene
retro_cpor_109,
Dasypus novemcinctus ENSDNOG00000019564 ortholog_one2many 2 retrogenes
retro_dnov_1011, retro_dnov_388,
Erinaceus europaeus ENSEEUG00000001133 possible_ortholog 1 retrogene
retro_eeur_643,
Felis catus ENSFCAG00000024942 ortholog_one2many 1 retrogene
retro_fcat_67,
Homo sapiens ENSG00000133606 ortholog_one2many 4 retrogenes
retro_hsap_1140, retro_hsap_4197, retro_hsap_4676, retro_hsap_4859,
Gorilla gorilla ENSGGOG00000023977 ortholog_many2many 4 retrogenes
retro_ggor_119, retro_ggor_2813, retro_ggor_3031, retro_ggor_381,
Macropus eugenii ENSMEUG00000007399 possible_ortholog 1 retrogene
retro_meug_1659,
Microcebus murinus ENSMICG00000002114 ortholog_one2many 1 retrogene
retro_mmur_1184,
Macaca mulatta ENSMMUG00000010420 ortholog_many2many 3 retrogenes
retro_mmul_191, retro_mmul_2597, retro_mmul_76,
Mus musculus ENSMUSG00000029922 ortholog_one2many 1 retrogene
retro_mmus_2663,
Nomascus leucogenys ENSNLEG00000001921 ortholog_one2many 4 retrogenes
retro_nleu_1027, retro_nleu_2167, retro_nleu_33, retro_nleu_939,
Otolemur garnettii ENSOGAG00000009877 ortholog_one2many 2 retrogenes
retro_ogar_3468, retro_ogar_424,
Ochotona princeps ENSOPRG00000010353 possible_ortholog 1 retrogene
retro_opri_1073,
Procavia capensis ENSPCAG00000014683 possible_ortholog 1 retrogene
retro_pcap_19,
Pongo abelii ENSPPYG00000018057 ortholog_many2many 3 retrogenes
retro_pabe_3435, retro_pabe_3776, retro_pabe_947,
Pan troglodytes ENSPTRG00000019766 ortholog_one2many 5 retrogenes
retro_ptro_2849, retro_ptro_3106, retro_ptro_3234, retro_ptro_75, retro_ptro_776,
Sus scrofa ENSSSCG00000016498 possible_ortholog 2 retrogenes
retro_sscr_43, retro_sscr_637,
Tupaia belangeri ENSTBEG00000004564 possible_ortholog 2 retrogenes
retro_tbel_1410, retro_tbel_71,
Tarsius syrichta ENSTSYG00000009996 ortholog_one2many 3 retrogenes
retro_tsyr_1256, retro_tsyr_1525, retro_tsyr_508,
Tursiops truncatus ENSTTRG00000009528 possible_ortholog 2 retrogenes
retro_ttru_1064, retro_ttru_1128,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_253 96.68 86.45
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2. retro_cfam_2157 89.41 86.45
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Download FASTA sequences of all ENSCAFG00000003953 retrocopies