RetrogeneDB ID: | retro_sscr_43 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 1:158362013..158363477(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSSSCG00000004836 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MKRN1 | ||
Ensembl ID: | ENSSSCG00000016498 | ||
Aliases: | None | ||
Description: | makorin ring finger protein 1 [Source:HGNC Symbol;Acc:7112] |
Percent Identity: | 59.59 % |
Parental protein coverage: | 60.37 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | AESSLAASSSLSAVVGPIVEMNMGEAESRNSNF-ATVGAGSEDWVNAIEFVPGQPYCGRTAPSCTEAPLQ |
AE...A.SS......G...E....EAE.......A..GAG.E.W..AIEFVPGQPY.GR.AP....AP.Q | |
Retrocopy | AEAPPAVSSRSFPLIGS-AERVFFEAETEYAGLEAAGGAGAEGWEHAIEFVPGQPYQGRMAPPIYVAPPQ |
Parental | SSVTKQESEKEQTAVETKKQLCPYAAVGECRYGENCVYLHGDPCDMCGLQVLHPVDAAQRSQHIKSCIEA |
...T..E....Q.A.....QLC..A..G.C..G..C.YLHGD.CD.CGL.VLHP.D.AQR..H...C.EA | |
Retrocopy | GLLTVRE----QFALGQRQQLCRDAIMGQCFRGPSCMYLHGDMCDLCGLKVLHPFDGAQRADHRRACMEA |
Parental | HEKDMELSFAVQRSKDMVCGICMEVVYEKANPSERRFGILSNCNHTYCLKCIRKWRSAKQFESKIIKSCP |
HE..MELSFAVQRS.D.VCGICMEVVYEKAN....RFGILS.CNHTYCLKCIR.WRSA.QF.....KSCP | |
Retrocopy | HEQNMELSFAVQRSADKVCGICMEVVYEKANRNDCRFGILSSCNHTYCLKCIRRWRSARQFGTWVVKSCP |
Parental | ECRITSNFVIPSEYWVEEKEEKQKLIQKYKEAMSNKACRYFDEGRGSCPFGGNCFYKHAYPDGRREEPQR |
.CR..S.FVIPSE.WVEE.EEKQ.LIQ.Y.EAMS.K.CRYF..GR..CPF..NCFYKHA.P.G..EEPQR | |
Retrocopy | QCRVISTFVIPSEFWVEEEEEKQRLIQQYLEAMSHKPCRYFVRGR-FCPFEENCFYKHAFPEGQGEEPQR |
Parental | QKVGTSSRYRAQ |
Q..G.....R.Q | |
Retrocopy | QGAGAPGPWRGQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 88 .00 RPM |
SRP014902_testis | 2 .55 RPM | 117 .54 RPM |
SRP018288_heart | 0 .13 RPM | 41 .39 RPM |
SRP018288_kidney | 0 .49 RPM | 54 .08 RPM |
SRP018288_liver | 0 .80 RPM | 31 .82 RPM |
SRP018288_lung | 0 .71 RPM | 78 .10 RPM |
SRP018856_adipose | 1 .09 RPM | 95 .01 RPM |
SRP035408_brain | 0 .22 RPM | 97 .60 RPM |
SRP035408_liver | 0 .00 RPM | 35 .17 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000008306 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000003953 | 2 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000011015 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000013474 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000000948 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000019564 | 2 retrocopies | |
Homo sapiens | ENSG00000133606 | 4 retrocopies | |
Gorilla gorilla | ENSGGOG00000023977 | 4 retrocopies | |
Microcebus murinus | ENSMICG00000002114 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000010420 | 3 retrocopies | |
Mus musculus | ENSMUSG00000029922 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000001921 | 4 retrocopies | |
Otolemur garnettii | ENSOGAG00000009877 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000018057 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000019766 | 5 retrocopies | |
Sus scrofa | ENSSSCG00000016498 | 2 retrocopies |
retro_sscr_43 , retro_sscr_637,
|
Tarsius syrichta | ENSTSYG00000009996 | 3 retrocopies | |
Tursiops truncatus | ENSTTRG00000009528 | 2 retrocopies |