RetrogeneDB ID: | retro_hsap_4676 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | X:40694004..40695279(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000238222 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MKRN1 | ||
Ensembl ID: | ENSG00000133606 | ||
Aliases: | MKRN1, RNF61 | ||
Description: | makorin ring finger protein 1 [Source:HGNC Symbol;Acc:7112] |
Percent Identity: | 88.08 % |
Parental protein coverage: | 88.8 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | WTKQVTCRYFMHGVCKEGDNCRYSHDLSDSPYSVVCKYFQRGYCIYGDRCRYEHSKPLKQEEATATELTT |
WTKQVTCRYF..G.CKEGDNCRYSHDLSD....VVCKYFQRG.C.YGDRCR.EHSKPLKQEEATATELTT | |
Retrocopy | WTKQVTCRYFKYGICKEGDNCRYSHDLSDRLCGVVCKYFQRGCCVYGDRCRCEHSKPLKQEEATATELTT |
Parental | KSSLAASSSLSSIVGPLVEMNTGEAESRNSNFATVGAGSEDWVNAIEFVPGQPYCGRTAPSCTEAPLQGS |
KSSLAASSSLSSIVGPLVEMNT.EAESRNSNFATV.AGSEDW.NAIEFVPGQPYCGRT.PSCTEAPLQGS | |
Retrocopy | KSSLAASSSLSSIVGPLVEMNTNEAESRNSNFATVVAGSEDWANAIEFVPGQPYCGRTVPSCTEAPLQGS |
Parental | VTKEESEKEQTAVETKKQLCPYAAVGECRYGENCVYLHGDSCDMCGLQVLHPMDAAQRSQHIKSCIEAHE |
VTKEESE.EQTAVETKKQLCPYAAVG.CRYGENCVYLHGD.CDMCGLQVLHPMDAAQRSQHI..CIEAHE | |
Retrocopy | VTKEESEEEQTAVETKKQLCPYAAVGQCRYGENCVYLHGDLCDMCGLQVLHPMDAAQRSQHIQACIEAHE |
Parental | KDMELSFAVQRSKDMVCGICMEVVYEKANPSERRFGILSNCNHTYCLKCIRKWRSAKQFESKIIKSCPEC |
KDME.SFAVQRSKD.VCGICMEVVYEKANP.E.RFGILSNCNHT.CLKCIRKWRSAK.FES.I.KSCP.C | |
Retrocopy | KDMEFSFAVQRSKDKVCGICMEVVYEKANPNEHRFGILSNCNHTFCLKCIRKWRSAKEFESRIVKSCPQC |
Parental | RITSNFVIPSEYWVEEKEEKQKLILKYKEAMSNKACRYFDEGRGSCPFGGNCFYKHAYPDGRREEPQRQK |
RITSNFVIPSEYWVEEKEEKQKLI.KYKEAMSNKAC.YFDEGRGSCPFG.NCFYKH.YPDGRREEPQRQ. | |
Retrocopy | RITSNFVIPSEYWVEEKEEKQKLIQKYKEAMSNKACKYFDEGRGSCPFGENCFYKHMYPDGRREEPQRQQ |
Parental | VGTSSRYRAQRRNHFWELIEERENSNPFDNDEEEVVTFELGEMLLMLLAAGGDDELTDSEDEWDLFHDEL |
VGTSSR...Q.RNHFWE..EE..NSNPFD.DEEE.VTFELGEMLLML.AAGGDD.LTDSE.EWDLF.D.. | |
Retrocopy | VGTSSRNPGQQRNHFWEFFEEGANSNPFD-DEEEAVTFELGEMLLML*AAGGDDKLTDSENEWDLFCD-- |
Parental | EDFYDLDL |
E.FY.LDL | |
Retrocopy | EEFYVLDL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .06 RPM | 106 .41 RPM |
bodymap2_adrenal | 0 .00 RPM | 102 .47 RPM |
bodymap2_brain | 0 .02 RPM | 85 .79 RPM |
bodymap2_breast | 0 .00 RPM | 98 .97 RPM |
bodymap2_colon | 0 .00 RPM | 157 .66 RPM |
bodymap2_heart | 0 .02 RPM | 74 .12 RPM |
bodymap2_kidney | 0 .00 RPM | 80 .86 RPM |
bodymap2_liver | 0 .00 RPM | 33 .27 RPM |
bodymap2_lung | 0 .00 RPM | 121 .84 RPM |
bodymap2_lymph_node | 0 .00 RPM | 110 .87 RPM |
bodymap2_ovary | 0 .08 RPM | 100 .41 RPM |
bodymap2_prostate | 0 .00 RPM | 118 .23 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 109 .15 RPM |
bodymap2_testis | 0 .90 RPM | 265 .36 RPM |
bodymap2_thyroid | 0 .09 RPM | 135 .98 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 237 .73 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_199585 | 1339 libraries | 399 libraries | 79 libraries | 9 libraries | 3 libraries |
Species | RetrogeneDB ID |
---|---|
Macaca mulatta | retro_mmul_76 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000008306 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000003953 | 2 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000011015 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000013474 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000000948 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000019564 | 2 retrocopies | |
Felis catus | ENSFCAG00000024942 | 1 retrocopy | |
Homo sapiens | ENSG00000133606 | 4 retrocopies | |
Gorilla gorilla | ENSGGOG00000023977 | 4 retrocopies | |
Microcebus murinus | ENSMICG00000002114 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000010420 | 3 retrocopies | |
Mus musculus | ENSMUSG00000029922 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000001921 | 4 retrocopies | |
Otolemur garnettii | ENSOGAG00000009877 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000018057 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000019766 | 5 retrocopies | |
Sus scrofa | ENSSSCG00000016498 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000009996 | 3 retrocopies | |
Tursiops truncatus | ENSTTRG00000009528 | 2 retrocopies |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .05 RPM |
FIN_HG00338 | 0 .04 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .03 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .02 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .02 RPM |
GBR_HG00137 | 0 .03 RPM |
GBR_HG00142 | 0 .03 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .03 RPM |
TSI_NA20532 | 0 .10 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .03 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .14 RPM |
YRI_NA18907 | 0 .03 RPM |
YRI_NA18916 | 0 .02 RPM |
YRI_NA19093 | 0 .05 RPM |
YRI_NA19099 | 0 .08 RPM |
YRI_NA19114 | 0 .05 RPM |
YRI_NA19118 | 0 .02 RPM |
YRI_NA19213 | 0 .05 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |