Parental gene: | MKRN1, ENSPTRG00000019766 |
| Aliases: | None |
| Description: | makorin ring finger protein 1 [Source:HGNC Symbol;Acc:7112] |
| Organism: | Chimpanzee (Pan troglodytes) |
| Coordinates: | 7:141928074..141954203(-) |
>ENSPTRG00000019766
ATGGCGGAGGCTGCAGCTCCCGGAACAACAGCCACAACATCAGGAGCAGGAGCGGCAGCGGCGACGGCGGCAGCAGCCTC
CCCCACCCCGATCCCCACAGTCACCGCCCCGTCCCTGGGGGCGGGCGGAGGGGGCGGCGGCAGCGACGGCAGCGGCGGCG
GCTGGACTAAACAGGTCACCTGCAGGTATTTTATGCATGGGGTTTGTAAGGAAGGAGACAACTGTCGCTACTCGCATGAC
CTCTCTGACAGTCCGTATAGTGTAGTGTGCAAGTATTTTCAGCGAGGGTACTGTATTTATGGAGACCGCTGCAGATATGA
ACATAGCAAGCCACTGAAACAGGAAGAAGCAACTGCTACAGAGCTAACTACAAAGTCATCCCTTGCTGCTTCCTCAAGTC
TCTCATCGATAGTTGGACCACTTGTTGAAATGAATACAGGCGAAGCTGAGTCAAGAAATTCAAACTTTGCAACTGTAGGA
GCAGGTTCAGAGGACTGGGTGAATGCTATTGAGTTTGTTCCTGGGCAACCCTACTGTGGCCGTACTGCGCCTTCCTGCAC
TGAAGCACCCCTGCAGGGCTCAGTGACCAAGGAAGAATCAGAGAAAGAGCAAACCGCCGTGGAGACAAAGAAGCAGCTGT
GCCCCTATGCTGCAGTGGGAGAGTGCCGATACGGGGAGAACTGTGTGTATATCCACGGAGATTCTTGTGACATGTGTGGG
CTGCAGGTCCTGCATCCAATGGATGCTGCCCAGAGATCGCAGCATATCAAATCGTGCATTGAGGCCCATGAGAAGGACAT
GGAGCTCTCATTTGCCGTGCAGCGCAGCAAGGACATGGTGTGTGGGATCTGCATGGAGGTGGTCTATGAGAAAGCCAACC
CCAGTGAGCGCCGCTTCGGGATCCTCTCCAACTGCAACCACACCTACTGTCTCAAGTGCATTCGCAAGTGGAGGAGTGCT
AAGCAATTTGAGAGCAAGATCATAAAGTCCTGCCCAGAATGCCGGATCACATCTAACTTTGTCATTCCAAGTGAGTACTG
GGTGGAGGAGAAAGAAGAGAAGCAGAAACTCATTCTGAAATACAAGGAGGCAATGAGCAACAAGGCGTGCAGGTATTTTG
ATGAAGGACGTGGGAGCTGCCCATTTGGAGGGAACTGTTTTTACAAGCATGCGTACCCTGATGGCCGTAGAGAGGAGCCA
CAGAGACAGAAAGTGGGAACATCAAGCAGATACCGGGCCCAACGAAGGAACCACTTCTGGGAACTCATTGAGGAAAGAGA
GAACAGCAACCCCTTTGACAACGATGAAGAAGAGGTTGTCACCTTTGAGCTGGGCGAGATGTTGCTTATGCTTTTGGCTG
CAGGTGGGGATGACGAACTAACAGACTCTGAGGATGAGTGGGACTTGTTTCATGATGAGCTGGAAGATTTTTATGACTTG
GATCTATAG
ATGGCGGAGGCTGCAGCTCCCGGAACAACAGCCACAACATCAGGAGCAGGAGCGGCAGCGGCGACGGCGGCAGCAGCCTC
CCCCACCCCGATCCCCACAGTCACCGCCCCGTCCCTGGGGGCGGGCGGAGGGGGCGGCGGCAGCGACGGCAGCGGCGGCG
GCTGGACTAAACAGGTCACCTGCAGGTATTTTATGCATGGGGTTTGTAAGGAAGGAGACAACTGTCGCTACTCGCATGAC
CTCTCTGACAGTCCGTATAGTGTAGTGTGCAAGTATTTTCAGCGAGGGTACTGTATTTATGGAGACCGCTGCAGATATGA
ACATAGCAAGCCACTGAAACAGGAAGAAGCAACTGCTACAGAGCTAACTACAAAGTCATCCCTTGCTGCTTCCTCAAGTC
TCTCATCGATAGTTGGACCACTTGTTGAAATGAATACAGGCGAAGCTGAGTCAAGAAATTCAAACTTTGCAACTGTAGGA
GCAGGTTCAGAGGACTGGGTGAATGCTATTGAGTTTGTTCCTGGGCAACCCTACTGTGGCCGTACTGCGCCTTCCTGCAC
TGAAGCACCCCTGCAGGGCTCAGTGACCAAGGAAGAATCAGAGAAAGAGCAAACCGCCGTGGAGACAAAGAAGCAGCTGT
GCCCCTATGCTGCAGTGGGAGAGTGCCGATACGGGGAGAACTGTGTGTATATCCACGGAGATTCTTGTGACATGTGTGGG
CTGCAGGTCCTGCATCCAATGGATGCTGCCCAGAGATCGCAGCATATCAAATCGTGCATTGAGGCCCATGAGAAGGACAT
GGAGCTCTCATTTGCCGTGCAGCGCAGCAAGGACATGGTGTGTGGGATCTGCATGGAGGTGGTCTATGAGAAAGCCAACC
CCAGTGAGCGCCGCTTCGGGATCCTCTCCAACTGCAACCACACCTACTGTCTCAAGTGCATTCGCAAGTGGAGGAGTGCT
AAGCAATTTGAGAGCAAGATCATAAAGTCCTGCCCAGAATGCCGGATCACATCTAACTTTGTCATTCCAAGTGAGTACTG
GGTGGAGGAGAAAGAAGAGAAGCAGAAACTCATTCTGAAATACAAGGAGGCAATGAGCAACAAGGCGTGCAGGTATTTTG
ATGAAGGACGTGGGAGCTGCCCATTTGGAGGGAACTGTTTTTACAAGCATGCGTACCCTGATGGCCGTAGAGAGGAGCCA
CAGAGACAGAAAGTGGGAACATCAAGCAGATACCGGGCCCAACGAAGGAACCACTTCTGGGAACTCATTGAGGAAAGAGA
GAACAGCAACCCCTTTGACAACGATGAAGAAGAGGTTGTCACCTTTGAGCTGGGCGAGATGTTGCTTATGCTTTTGGCTG
CAGGTGGGGATGACGAACTAACAGACTCTGAGGATGAGTGGGACTTGTTTCATGATGAGCTGGAAGATTTTTATGACTTG
GATCTATAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 62 .44 RPM |
| SRP007412_cerebellum | 123 .61 RPM |
| SRP007412_heart | 87 .53 RPM |
| SRP007412_kidney | 90 .01 RPM |
| SRP007412_liver | 52 .73 RPM |
| SRP007412_testis | 1105 .68 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000008306 | ortholog_one2many | 2 retrogenes | |
| Canis familiaris | ENSCAFG00000003953 | ortholog_one2many | 2 retrogenes | |
| Choloepus hoffmanni | ENSCHOG00000011015 | ortholog_one2one | 3 retrogenes | |
| Callithrix jacchus | ENSCJAG00000013474 | ortholog_one2one | 2 retrogenes | |
| Cavia porcellus | ENSCPOG00000000948 | possible_ortholog | 1 retrogene | |
| Dasypus novemcinctus | ENSDNOG00000019564 | ortholog_one2one | 2 retrogenes | |
| Felis catus | ENSFCAG00000024942 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000133606 | ortholog_one2one | 4 retrogenes | |
| Gorilla gorilla | ENSGGOG00000023977 | ortholog_one2one | 4 retrogenes | |
| Microcebus murinus | ENSMICG00000002114 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000010420 | ortholog_one2one | 3 retrogenes | |
| Mus musculus | ENSMUSG00000029922 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000001921 | ortholog_one2one | 4 retrogenes | |
| Otolemur garnettii | ENSOGAG00000009877 | ortholog_one2one | 2 retrogenes | |
| Pongo abelii | ENSPPYG00000018057 | ortholog_one2one | 3 retrogenes | |
| Sus scrofa | ENSSSCG00000016498 | ortholog_one2one | 2 retrogenes | |
| Tarsius syrichta | ENSTSYG00000009996 | ortholog_one2one | 3 retrogenes | |
| Tursiops truncatus | ENSTTRG00000009528 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ptro_75 | 62.80 | 60.58 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ptro_776 | 87.67 | 88.59 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_ptro_2849 | 87.00 | 62.03 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_ptro_3106 | 87.15 | 88.80 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_ptro_3234 | 80.52 | 72.20 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPTRG00000019766 retrocopies