Parental gene: | MKRN1, ENSPPYG00000018057 |
| Aliases: | None |
| Description: | makorin ring finger protein 1 [Source:HGNC Symbol;Acc:7112] |
| Organism: | Orangutan (Pongo abelii) |
| Coordinates: | 7:137699425..137718512(-) |
>ENSPPYG00000018057
ATGCATGGGGTTTGTAAGGAAGGAGACAACTGTCGCTACTCGCATGACCTCTCTGACAGTCCGTATAGTGTAGTGTGCAA
GTATTTTCAGCGAGGGTACTGTATTTATGGAGACCGCTGCAGATATGAACATAGCAAGCCATTGAAACAGGAAGAAGCAA
GTGTTACAGAGCTAACTACAAAGTCATCCCTTGCTGCTTCCTCAAGTCTGTCATCGATAGTTGGACCACTTGTTGAAATG
AATACAGGCGAAGCTGAGTCAAGAAATTCAAACTTTGCAACTGTAGGAGCAGGTTCAGAGGACTGGGTGAATGCTATTGA
GTTTGTTCCTGGGCAACCCTACTGTGGCCGTACTGCGCCTTCCTGCACTGAAGCACCCCCGCAGGGCTCAGTGACCAAGG
AAGAATCAGAGAAAGAGCAAACCGCCGTGGAGACAAAGAAGCAGCTGTGCCCCTATGCTGCAGTGGGAGAGTGCCGATAC
GGGGAGAACTGTGTGTATCTCCACGGGGATTCTTGTGACATGTGTGGGCTGCAGGTCCTGCATCCGATGGATGCTGCCCA
GAGATCACAGCATATCAAATCGTGCATTGAGGCCCATGAGAAGGACATGGAGCTCTCATTTGCCGTGCAGCGCAGCAAGG
ACATGGTGTGTGGGATCTGCATGGAGGTGGTCTATGAGAAAGCCAACCCCAGTGAGCGCCGCTTCGGGATCCTCTCCAAC
TGCAACCACACCTACTGTCTCAAGTGCATTCGCAAGTGGAGGAGTGCTAAGCAATTTGAGAGCAAGATCATAAAGTCCTG
CCCAGAATGCCGGATCACATCTAACTTTGTCATTCCAAGTGAGTACTGGGTGGAGGAGAAAGAAGAGAAGCAGAAACTCA
TTCTGAAATACAAGGAGGCAATGAGCAACAAGGCGTGCAGGTATTTTGATGAAGGACGTGGGAGCTGCCCATTTGGAGGG
AACTGTTTTTACAAGCATGCGTACCCTGATGGCCGTAGAGAGGAGCCACAGAGACAGAAAGTGGGAACATCAAGCAGATA
CCGGGCCCAACGAAGGAACCACTTCTGGGAACTCATTGAGGAAAGAGAGAACAGCAACCCCTTTGACAACGATGAAGAAG
AGGTTGTCACCTTTGAGCTGGGCGAGATGTTGCTTATGCTTTTGGCTGCAGGTGGGGACGACGAACTAACAGACTCTGAA
GATGAGTGGGACTTGTTTCATGATGAGCTGGAAGATTTTTATGACTTGGATCTATAG
ATGCATGGGGTTTGTAAGGAAGGAGACAACTGTCGCTACTCGCATGACCTCTCTGACAGTCCGTATAGTGTAGTGTGCAA
GTATTTTCAGCGAGGGTACTGTATTTATGGAGACCGCTGCAGATATGAACATAGCAAGCCATTGAAACAGGAAGAAGCAA
GTGTTACAGAGCTAACTACAAAGTCATCCCTTGCTGCTTCCTCAAGTCTGTCATCGATAGTTGGACCACTTGTTGAAATG
AATACAGGCGAAGCTGAGTCAAGAAATTCAAACTTTGCAACTGTAGGAGCAGGTTCAGAGGACTGGGTGAATGCTATTGA
GTTTGTTCCTGGGCAACCCTACTGTGGCCGTACTGCGCCTTCCTGCACTGAAGCACCCCCGCAGGGCTCAGTGACCAAGG
AAGAATCAGAGAAAGAGCAAACCGCCGTGGAGACAAAGAAGCAGCTGTGCCCCTATGCTGCAGTGGGAGAGTGCCGATAC
GGGGAGAACTGTGTGTATCTCCACGGGGATTCTTGTGACATGTGTGGGCTGCAGGTCCTGCATCCGATGGATGCTGCCCA
GAGATCACAGCATATCAAATCGTGCATTGAGGCCCATGAGAAGGACATGGAGCTCTCATTTGCCGTGCAGCGCAGCAAGG
ACATGGTGTGTGGGATCTGCATGGAGGTGGTCTATGAGAAAGCCAACCCCAGTGAGCGCCGCTTCGGGATCCTCTCCAAC
TGCAACCACACCTACTGTCTCAAGTGCATTCGCAAGTGGAGGAGTGCTAAGCAATTTGAGAGCAAGATCATAAAGTCCTG
CCCAGAATGCCGGATCACATCTAACTTTGTCATTCCAAGTGAGTACTGGGTGGAGGAGAAAGAAGAGAAGCAGAAACTCA
TTCTGAAATACAAGGAGGCAATGAGCAACAAGGCGTGCAGGTATTTTGATGAAGGACGTGGGAGCTGCCCATTTGGAGGG
AACTGTTTTTACAAGCATGCGTACCCTGATGGCCGTAGAGAGGAGCCACAGAGACAGAAAGTGGGAACATCAAGCAGATA
CCGGGCCCAACGAAGGAACCACTTCTGGGAACTCATTGAGGAAAGAGAGAACAGCAACCCCTTTGACAACGATGAAGAAG
AGGTTGTCACCTTTGAGCTGGGCGAGATGTTGCTTATGCTTTTGGCTGCAGGTGGGGACGACGAACTAACAGACTCTGAA
GATGAGTGGGACTTGTTTCATGATGAGCTGGAAGATTTTTATGACTTGGATCTATAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 90 .12 RPM |
| SRP007412_cerebellum | 95 .21 RPM |
| SRP007412_heart | 43 .38 RPM |
| SRP007412_kidney | 62 .02 RPM |
| SRP007412_liver | 35 .47 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000008306 | ortholog_many2many | 2 retrogenes | |
| Canis familiaris | ENSCAFG00000003953 | ortholog_many2many | 2 retrogenes | |
| Choloepus hoffmanni | ENSCHOG00000011015 | ortholog_one2many | 3 retrogenes | |
| Callithrix jacchus | ENSCJAG00000013474 | ortholog_one2one | 2 retrogenes | |
| Cavia porcellus | ENSCPOG00000000948 | possible_ortholog | 1 retrogene | |
| Dasypus novemcinctus | ENSDNOG00000019564 | ortholog_one2many | 2 retrogenes | |
| Erinaceus europaeus | ENSEEUG00000001133 | possible_ortholog | 1 retrogene | |
| Felis catus | ENSFCAG00000024942 | ortholog_one2many | 1 retrogene | |
| Homo sapiens | ENSG00000133606 | ortholog_one2one | 4 retrogenes | |
| Gorilla gorilla | ENSGGOG00000023977 | ortholog_one2one | 4 retrogenes | |
| Macropus eugenii | ENSMEUG00000007399 | possible_ortholog | 1 retrogene | |
| Microcebus murinus | ENSMICG00000002114 | ortholog_one2many | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000010420 | ortholog_one2one | 3 retrogenes | |
| Mus musculus | ENSMUSG00000029922 | ortholog_one2many | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000001921 | ortholog_one2one | 4 retrogenes | |
| Otolemur garnettii | ENSOGAG00000009877 | ortholog_one2many | 2 retrogenes | |
| Ochotona princeps | ENSOPRG00000010353 | possible_ortholog | 1 retrogene | |
| Procavia capensis | ENSPCAG00000014683 | possible_ortholog | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000019766 | ortholog_one2one | 5 retrogenes | |
| Sus scrofa | ENSSSCG00000016498 | ortholog_one2many | 2 retrogenes | |
| Tupaia belangeri | ENSTBEG00000004564 | possible_ortholog | 2 retrogenes | |
| Tarsius syrichta | ENSTSYG00000009996 | ortholog_one2many | 3 retrogenes | |
| Tursiops truncatus | ENSTTRG00000009528 | ortholog_one2many | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_pabe_947 | 87.62 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_pabe_3435 | 86.33 | 71.53 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_pabe_3776 | 82.52 | 68.42 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPPYG00000018057 retrocopies