RetrogeneDB ID: retro_nleu_33

Retrocopy location

• Organism: Gibbon (Nomascus leucogenys)
• Coordinates: GL397408.1:284802..286326(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSNLEG00000018794
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: MKRN1
• Ensembl ID: ENSNLEG00000001921
• Aliases: None
• Description: None

Sequence

>retro_nleu_33
ATGGAAGAGCCTGCAGCTCCCTCAGAAGCCCACGAGGCAGCCGGGGCCCAGGCAGGTGCTGAGGCAGCAAGGGAGGGTGT
GTCTGGGCCGGACCTTCCCGTCTGTGAGCCCTCCGGGGAATCTGCTGCTCCAGATTCAGCCCTGCCACATGCGGCAAGGG
GCTGGGCCCCCTTCCCTGTCGCTCCAGTCCCTGCCCGCCTCCGCAGAGGAGGCCTGAGGCCTGCCCCAGCCTCAGGAGGA
GGAGCCTGGCCCAGTCCGGTGCCGAGCCGAAGCAGCGGCATTTGGACAAAGCAGATCATCTGCAGGTATTATATACATGG
GCAGTGCAAGGAGGGGGAGAACTGTCGCTATTCCCACGACCTTTCTGGTCGGAAGATGGCCACTGAGGGCGGCGTTTCGC
CACCTGGGGCCTCTGCAGGTGGAGGCCCTAGCACGGCTGCGCACATCGAGCCCCCGACTCAGGAAGTGGCAGAAGCCCCC
CCGGCTGCATCCTCCCTTTCATTGCCTGTGATTGGCTCGGCTGCTGAAAGAGGTTTCTTTGAAGCCGAGAGAGACAATGC
AGACCGTGGAGCTGCTGGAGGAGCAGGTGTAGAAAGCTGGGCGGATGCCATTGAGTTTGTTCCAGGGCAGCCCTACCGGG
GCCGCTGGGTTGCATCTGCCCCCGAGGCTCCTCTACAGAGCTCAGAGACTGAGAGGAAGCAGATGGCTGTGGGCAGGGGG
TTGCGGTTTTGCTATTATGCTTACAGGGGAATTTGCTTTCGTGGGGAGAGCTGTATGTACCTCCATGGAGACATATGCGA
CATGTGTGGGATGCAGACCTTGCACCCCATGGATGCTGCCCAGAGGGAAGAACATATGAGGGCCTGCATTGAAGCACACG
AGAAAGATATGGAACTCTCGTTTGCTGTGCAGCGTGGTATGGACAAGGTGTGTGGCATCTGCATGGAGGTTGTCTATGAG
AAGGCCAACCCCAATGACCGCCGCTTTGGCATTCTTTCCAATTGCAACCATACCTTCTGTATTAGGTGTATCCGCAGGTG
GAGAAGTGCCAGACAGTTTGATAACAGGATCATCAAGTCTTGCCCACATTGCAGGGTCACCTCCGAATTGGTCATTCCCA
GTGATTTCTGGGTGGAGGAGGAGGAAGAGAAGCAGAAACTTATTCAGCAATACAAGGAGGCAATGAGCAACAAGGCCTGC
AGGTATTTTGCGGAAGGCAGGGGTAACTGCCCATTTGGAGACACATGCTTTTACAAGCATGAATACCCTGAGGGCTGGGG
AGATGAGCCTCCTGGGCCAGGTGGTGGGTCATTCAGCGCATACTGGCATCAACTTGTGGAGCCTGTGCGAATGGGAGAGG
GCAACATGCTCTATAAAAGCATTAAGAAGGAGCTTGTCGTGCTTCGGCTGGCCAGTCTGTTGTTTAAGCGGTTTCTTTCA
CTGAGAGATGAGTTACCCCTCTCTGAGGACCAGTGGGACTTGCTTCATTATGAGCTGGAAGAATATTTCAATTTGAATCT
GTAG

Alignment

ORF - retro_nleu_33 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 62.8 %
• Parental protein coverage: 60.58 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  TELTTKSSLAASSSLSSIAGPLVEMNTGEAESRNSNF-ATVGAGSEDWVNAIEFVPGQPYCGRTAPSCTE
          T........AASS......G...E....EAE..N....A..GAG.E.W..AIEFVPGQPY.GR...S..E
Retrocopy TQEVAEAPPAASSLSLPVIGSAAERGFFEAERDNADRGAAGGAGVESWADAIEFVPGQPYRGRWVASAPE

Parental  APLQGSVTKEESEKEQTAVETKKQLCPYAAVGECRYGENCVYLHGDSCDMCGLQVLHPMDAAQRSQHIKS
          APLQ.S....E.E..Q.AV......C.YA..G.C..GE.C.YLHGD.CDMCG.Q.LHPMDAAQR..H...
Retrocopy APLQSS----ETERKQMAVGRGLRFCYYAYRGICFRGESCMYLHGDICDMCGMQTLHPMDAAQREEHMRA

Parental  CIEAHEKDMELSFAVQRSKDMVCGICMEVVYEKANPSERRFGILSNCNHTYCLKCIRKWRSAKQFESKII
          CIEAHEKDMELSFAVQR..D.VCGICMEVVYEKANP..RRFGILSNCNHT.C..CIR.WRSA.QF...II
Retrocopy CIEAHEKDMELSFAVQRGMDKVCGICMEVVYEKANPNDRRFGILSNCNHTFCIRCIRRWRSARQFDNRII

Parental  KSCPECRITSNFVIPSEYWVEEKEEKQKLILKYKEAMSNKACRYFDEGRGSCPFGGNCFYKHAYPDGRRE
          KSCP.CR.TS..VIPS..WVEE.EEKQKLI..YKEAMSNKACRYF.EGRG.CPFG..CFYKH.YP.G...
Retrocopy KSCPHCRVTSELVIPSDFWVEEEEEKQKLIQQYKEAMSNKACRYFAEGRGNCPFGDTCFYKHEYPEGWGD

Parental  EPQRQKVGTSSRY
          EP.....G..S.Y
Retrocopy EPPGPGGGSFSAY

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Nomascus leucogenys was not studied using RNA-Seq expression data.

ChIP-Seq

Nomascus leucogenys was not studied using ChIP-Seq data.

EST

Nomascus leucogenys was not studied using EST data.

TSS

Nomascus leucogenys was not studied using FANTOM5 data.

Lab

retro_nleu_33 was not experimentally validated.

Homology

Retrocopy orthology:

Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 19 parental genes, and 47 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000008306	2 retrocopies	retro_btau_401, retro_btau_943,
Canis familiaris	ENSCAFG00000003953	2 retrocopies	retro_cfam_2157, retro_cfam_253,
Choloepus hoffmanni	ENSCHOG00000011015	3 retrocopies	retro_chof_173, retro_chof_2357, retro_chof_89,
Callithrix jacchus	ENSCJAG00000013474	2 retrocopies	retro_cjac_210, retro_cjac_2991,
Cavia porcellus	ENSCPOG00000000948	1 retrocopy	retro_cpor_109,
Dasypus novemcinctus	ENSDNOG00000019564	2 retrocopies	retro_dnov_1011, retro_dnov_388,
Felis catus	ENSFCAG00000024942	1 retrocopy	retro_fcat_67,
Homo sapiens	ENSG00000133606	4 retrocopies	retro_hsap_1140, retro_hsap_4197, retro_hsap_4676, retro_hsap_4859,
Gorilla gorilla	ENSGGOG00000023977	4 retrocopies	retro_ggor_119, retro_ggor_2813, retro_ggor_3031, retro_ggor_381,
Microcebus murinus	ENSMICG00000002114	1 retrocopy	retro_mmur_1184,
Macaca mulatta	ENSMMUG00000010420	3 retrocopies	retro_mmul_191, retro_mmul_2597, retro_mmul_76,
Mus musculus	ENSMUSG00000029922	1 retrocopy	retro_mmus_2663,
Nomascus leucogenys	ENSNLEG00000001921	4 retrocopies	retro_nleu_1027, retro_nleu_2167, retro_nleu_33 , retro_nleu_939,
Otolemur garnettii	ENSOGAG00000009877	2 retrocopies	retro_ogar_3468, retro_ogar_424,
Pongo abelii	ENSPPYG00000018057	3 retrocopies	retro_pabe_3435, retro_pabe_3776, retro_pabe_947,
Pan troglodytes	ENSPTRG00000019766	5 retrocopies	retro_ptro_2849, retro_ptro_3106, retro_ptro_3234, retro_ptro_75, retro_ptro_776,
Sus scrofa	ENSSSCG00000016498	2 retrocopies	retro_sscr_43, retro_sscr_637,
Tarsius syrichta	ENSTSYG00000009996	3 retrocopies	retro_tsyr_1256, retro_tsyr_1525, retro_tsyr_508,
Tursiops truncatus	ENSTTRG00000009528	2 retrocopies	retro_ttru_1064, retro_ttru_1128,