Parental gene:

MKRN1, ENSSSCG00000016498

Aliases:None
Description:makorin ring finger protein 1 [Source:HGNC Symbol;Acc:7112]
Organism:Pig (Sus scrofa)
Coordinates:18:9833911..9859171(-)


>ENSSSCG00000016498
ATGGCGGAGGCTGCAGCTCCCGGAACAACAGCCACAACACCCGGAGCAGGAGCGGCAGCAGCGGCGGTGGCAGCGGCCTC
CCCCACCCCTATCCCCGCAGTCACCTCCCCGTCCCCGGGGGCGGGGGGCGGGGGAGGCGGCAGCGACAGCGGCGGCGGCG
GCTGGACTAAACAGGTCACCTGCAGGTATTTCATGCATGGGGTTTGTAAGGAAGGAGATAACTGTCGCTATTCACATGAC
CTCTCTGACAGTCCATACGGTGTAGTGTGCAAGTATTTTCAGCGAGGGTACTGTATTTACGGAGACCGCTGCAGGTATGA
ACATAGCAAGCCACTGAAACAGGAGGAAACAACTGCTACAGATCTAACTGCAGAGTCATCCCTTGCTGCTTCCTCAAGTC
TCTCAGCAGTAGTTGGACCAATTGTTGAAATGAATATGGGTGAAGCGGAGTCAAGAAATTCAAACTTTGCAACTGTAGGA
GCAGGTTCAGAAGACTGGGTGAACGCCATCGAGTTTGTTCCTGGGCAGCCCTACTGTGGCCGTACTGCTCCTTCCTGCAC
TGAAGCACCCCTGCAGAGCTCGGTGACCAAGCAAGAGTCCGAGAAAGAGCAAACTGCAGTGGAGACGAAGAAGCAGCTCT
GTCCCTATGCTGCGGTGGGGGAGTGCCGCTACGGGGAGAACTGTGTGTATCTCCACGGAGACCCCTGTGACATGTGTGGG
CTGCAGGTCCTCCATCCCGTGGACGCTGCCCAGAGATCACAGCACATCAAATCGTGCATCGAGGCCCACGAGAAGGACAT
GGAGCTCTCGTTTGCCGTGCAGCGCAGCAAGGACATGGTGTGTGGGATCTGCATGGAGGTGGTGTACGAGAAGGCCAACC
CCAGCGAGCGCCGCTTCGGGATCCTCTCCAACTGCAACCACACCTACTGTCTCAAGTGTATTCGCAAGTGGAGGAGTGCT
AAGCAGTTTGAGAGCAAGATCATAAAGTCCTGCCCAGAATGCCGGATCACATCTAACTTTGTCATTCCAAGTGAGTACTG
GGTGGAGGAGAAAGAAGAGAAGCAGAAACTCATTCAGAAATACAAGGAGGCAATGAGCAACAAGGCGTGCAGGTATTTTG
ATGAAGGACGTGGGAGCTGCCCATTTGGAGGCAACTGTTTTTACAAGCACGCGTACCCCGATGGCCGTAGAGAGGAGCCA
CAGAGACAGAAAGTGGGAACATCAAGCAGATACCGGGCCCAACGAAGGAACCACTTCTGGGAGCTCATTGAGGAAAGACA
GAACGGCAGCCCCTTTGACCACGACGAAGAAGAGGTGGTCACCTTTGAGCTGGGCGAGATGTTGCTTATGCTTTTGGCCG
CAGGTGGGGACGACGACCTGACAGACTCTGAAGACGAGTGGGACTTGTTTCACGATGAGCTGGAAGACTTTTATGACTTG
GATCTATAG

Library Parental gene expression (RPM)
SRP014902_placenta 88 .00 RPM
SRP014902_testis 117 .54 RPM
SRP018856_adipose 95 .01 RPM
SRP018288_kidney 54 .08 RPM
SRP018288_lung 78 .10 RPM
SRP018288_liver 31 .82 RPM
SRP018288_heart 41 .39 RPM
SRP035408_liver 35 .17 RPM
SRP035408_brain 97 .60 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000008306 ortholog_one2many 2 retrogenes
retro_btau_401, retro_btau_943,
Canis familiaris ENSCAFG00000003953 possible_ortholog 2 retrogenes
retro_cfam_2157, retro_cfam_253,
Choloepus hoffmanni ENSCHOG00000011015 ortholog_one2one 3 retrogenes
retro_chof_173, retro_chof_2357, retro_chof_89,
Callithrix jacchus ENSCJAG00000013474 ortholog_one2many 2 retrogenes
retro_cjac_210, retro_cjac_2991,
Cavia porcellus ENSCPOG00000000948 possible_ortholog 1 retrogene
retro_cpor_109,
Dasypus novemcinctus ENSDNOG00000019564 ortholog_one2one 2 retrogenes
retro_dnov_1011, retro_dnov_388,
Homo sapiens ENSG00000133606 ortholog_one2one 4 retrogenes
retro_hsap_1140, retro_hsap_4197, retro_hsap_4676, retro_hsap_4859,
Gorilla gorilla ENSGGOG00000023977 ortholog_one2many 4 retrogenes
retro_ggor_119, retro_ggor_2813, retro_ggor_3031, retro_ggor_381,
Microcebus murinus ENSMICG00000002114 ortholog_one2one 1 retrogene
retro_mmur_1184,
Macaca mulatta ENSMMUG00000010420 ortholog_one2many 3 retrogenes
retro_mmul_191, retro_mmul_2597, retro_mmul_76,
Mus musculus ENSMUSG00000029922 ortholog_one2one 1 retrogene
retro_mmus_2663,
Nomascus leucogenys ENSNLEG00000001921 ortholog_one2one 4 retrogenes
retro_nleu_1027, retro_nleu_2167, retro_nleu_33, retro_nleu_939,
Otolemur garnettii ENSOGAG00000009877 ortholog_one2one 2 retrogenes
retro_ogar_3468, retro_ogar_424,
Pongo abelii ENSPPYG00000018057 ortholog_one2many 3 retrogenes
retro_pabe_3435, retro_pabe_3776, retro_pabe_947,
Pan troglodytes ENSPTRG00000019766 ortholog_one2one 5 retrogenes
retro_ptro_2849, retro_ptro_3106, retro_ptro_3234, retro_ptro_75, retro_ptro_776,
Tarsius syrichta ENSTSYG00000009996 ortholog_one2one 3 retrogenes
retro_tsyr_1256, retro_tsyr_1525, retro_tsyr_508,
Tursiops truncatus ENSTTRG00000009528 ortholog_one2one 2 retrogenes
retro_ttru_1064, retro_ttru_1128,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_43 59.59 60.37
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2. retro_sscr_637 67.77 55.39
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Download FASTA sequences of all ENSSSCG00000016498 retrocopies