RetrogeneDB ID: | retro_ggor_3031 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | X:71298309..71299517(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MKRN1 | ||
Ensembl ID: | ENSGGOG00000023977 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 83.9 % |
Parental protein coverage: | 86.84 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | SWTKQVTCRYFMHGVCKDRGNCGYSHDLSDSPYGVVCKYFQQGYCVYGDCCKYEHSKPLKQEEATATELT |
SWTKQVTCRYFMHGVCKDRGNCGYSHDLSDSPYGVVCKYFQQGYCVYGDCCKYEHSKPL.QEE.TA.ELT | |
Retrocopy | SWTKQVTCRYFMHGVCKDRGNCGYSHDLSDSPYGVVCKYFQQGYCVYGDCCKYEHSKPLNQEEGTAAELT |
Parental | TKSSLAASSSLSSIVGPLVEMNTGEAESRNSNFATVGAGSEDWVNAIEFVPGQPYCGRTAPSCTEAPLQG |
TKSSLAASSSLSS.....VEMNT.EAESRNSNFATVGAGS.DWVNAIEFVPGQPYC..T.PS.TEAPLQG | |
Retrocopy | TKSSLAASSSLSS----IVEMNTSEAESRNSNFATVGAGSGDWVNAIEFVPGQPYCSPTVPSFTEAPLQG |
Parental | SVTKEESEKEQTAVETKKQLCPYAAVGECRYGENCVYLHGDSCDMCGLQVLHPMDAAQRSQHIKSCIEAH |
.VTKEESEK.Q.A.ETKKQLCP.AAVGEC.YGENCVYLHGDSCDM.G.QVLHPMD.AQRSQ.IKSCIEAH | |
Retrocopy | PVTKEESEKKQIAMETKKQLCPFAAVGEC*YGENCVYLHGDSCDMYGPQVLHPMDTAQRSQRIKSCIEAH |
Parental | EKDMELSFAVQRSKDMVCGICMEVVYEKANPSERRFGILSNCNHTYCLKCIRKWRSAKQFESKIIKSCPE |
EKD.ELSFAVQRSKDMVCGICMEVVYEKAN.S.R.F.....CNHTYCLKCI..WR.AKQFESKIIKSCPE | |
Retrocopy | EKDIELSFAVQRSKDMVCGICMEVVYEKANLS*RCFVVFFICNHTYCLKCIWTWRRAKQFESKIIKSCPE |
Parental | CRITSNFVIPSEYWVEEKEEKQKLILKYKEAMSNKACRYFDEGRGSCPFGGNCFYKHAYPDGRREEPQRQ |
C.ITSN.VIPSEYWVEEKEEKQKL..KYKE.MSNKAC.YFDEG.GSCPFGGNCFYKHA...GR....... | |
Retrocopy | CQITSNLVIPSEYWVEEKEEKQKLVQKYKETMSNKACTYFDEGHGSCPFGGNCFYKHA-*RGRERSHRDR |
Parental | K-VGTSSRYRAQRRNHFWELIEERENSNPFDNDEEEVVTFELGEMLLMLLATGGDDELTD |
K.VGT.SRY.AQ.RNHFWELIEERENSNPFD...EEVV.FELG.MLLMLLA.G.D..LTD | |
Retrocopy | K<VGTLSRYGAQQRNHFWELIEERENSNPFDS-KEEVVIFELGKMLLMLLASGRDGKLTD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .38 RPM | 72 .46 RPM |
SRP007412_cerebellum | 0 .47 RPM | 59 .22 RPM |
SRP007412_heart | 0 .22 RPM | 26 .64 RPM |
SRP007412_kidney | 0 .41 RPM | 52 .54 RPM |
SRP007412_liver | 0 .05 RPM | 35 .19 RPM |
SRP007412_testis | 0 .21 RPM | 400 .00 RPM |