RetrogeneDB ID: | retro_ogar_424 | ||
Retrocopylocation | Organism: | Bushbaby (Otolemur garnettii) | |
Coordinates: | GL873521.1:40024672..40025994(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOGAG00000034546 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MKRN1 | ||
Ensembl ID: | ENSOGAG00000009877 | ||
Aliases: | None | ||
Description: | makorin ring finger protein 1 [Source:HGNC Symbol;Acc:7112] |
Percent Identity: | 85.52 % |
Parental protein coverage: | 89.43 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | SGSGSGSGSGSGWTKQVTCRYFMHGVCKEGDNCRYSHDLSDSPYGVVCKYYQRGYCIYGDRCRYEHSKPL |
S....G.G.GSGWTKQVTCRYFMHGVCKEG.NC.YS.DLSDSPYGVVCK.YQRGYCIYGDRCR.EH.KPL | |
Retrocopy | SPGAGGGGCGSGWTKQVTCRYFMHGVCKEGENCHYSRDLSDSPYGVVCKDYQRGYCIYGDRCREEHGKPL |
Parental | KQEEATATDLTTKSSVAASSSLSSAVGPLVEMNTSEAESRNSNFRSVGAGPEDWVNAIEFVPGQPYCGRT |
KQEEATA.DLT.KSSVAASSSLSSAVG.LV.MNT.EAESRNSNFRSVGAGPEDWV.A.EFV.GQPYCG.T | |
Retrocopy | KQEEATAPDLTAKSSVAASSSLSSAVGSLVAMNTGEAESRNSNFRSVGAGPEDWVKATEFVAGQPYCGHT |
Parental | APSCTEAPLQGSVTKEESEKEQNT-VETKKQLCPYAAVGECRYGENCVYLHGDSCDMCGLQVLHPMDAAQ |
APSCTEA.LQGSVTKEESEKEQ...VETKKQLCP.A..GEC.YGENCVYLH..SC..CGL..LHPMDAAQ | |
Retrocopy | APSCTEALLQGSVTKEESEKEQTAHVETKKQLCPCAVMGECPYGENCVYLHRNSCERCGLGILHPMDAAQ |
Parental | RSQHIKSCIEAHEKDMELSFAVQRSKDMVCGICMEVVYEKANPSERRFGILSNCNHTYCLKCIRKWRSAK |
RSQHIKSCIE.HE.DM.LSFAVQRSK.MVCGICMEV.YEKANPSE..F.ILSN.NHTYCLKCIRKWRSAK | |
Retrocopy | RSQHIKSCIEDHEEDMALSFAVQRSKEMVCGICMEVEYEKANPSEHCFRILSNYNHTYCLKCIRKWRSAK |
Parental | QFESKIIKSCPECRITSNFVIPSEYWVEEKEEKQKLIQKYKEAMSNKACRY-FDEGRGSCPFGGNCFYKH |
Q..SK..KS.PECRITSNFV.PSEYWVEEKE.KQKLIQKYKEA.SNKACRY.FDEG.GSCPFGGNCFYKH | |
Retrocopy | QWGSKMVKSYPECRITSNFVVPSEYWVEEKEKKQKLIQKYKEATSNKACRY<FDEG*GSCPFGGNCFYKH |
Parental | AYPDGRREEPQRQKVGTSSRYRAQRRNHFWELIEERENSSPFDNDEEEVVTFELGEMLLMLLAAGGDDEL |
AYP.G.REEPQRQKVGTSSRY.A.RRNH.WELIEERE.SSPFDNDEEEVV.FELG.MLLML.AAGGDDEL | |
Retrocopy | AYPHGHREEPQRQKVGTSSRYWARRRNHCWELIEEREKSSPFDNDEEEVVAFELGKMLLMLWAAGGDDEL |
Parental | TDSEDEWDLFHDELEDFYDLDL |
TDSED.WDLFHDELEDFYDLDL | |
Retrocopy | TDSEDKWDLFHDELEDFYDLDL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |