RetrogeneDB ID: | retro_mmur_1184 | ||
Retrocopylocation | Organism: | Mouse Lemur (Microcebus murinus) | |
Coordinates: | scaffold_29774:1607..2449(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMICG00000008862 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MKRN1 | ||
Ensembl ID: | ENSMICG00000002114 | ||
Aliases: | None | ||
Description: | makorin ring finger protein 1 [Source:HGNC Symbol;Acc:7112] |
Percent Identity: | 52.76 % |
Parental protein coverage: | 59.58 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | AASPSLPSAVGPLAEMDTGEAESRNSNL-ATVGAGSEDWVNAIEFVPGQPYCGRTAPSCT-DAPLQGSVT |
..S.SLP...G..AE.....A...N....AT.GAG.E.W..A.EF..GQP..G...P.C...AP.Q..VT | |
Retrocopy | SSSGSLPM-IGSAAERGFHDADTDNAGHGATGGAGPEGWEHAVEFYSGQPLPGPLTPVCP>EAPGQSGVT |
Parental | KEESEKEQTAVETKKQLCPYAAVGECRYGENCV-YLHGDSCDMCGLQVLHPMDAAQRSQHI-KSCIEAHE |
....E..Q..V.....LC.YA..G.C..GE....Y.HGD.C..C.L.VLH..D.A.R..H....C.EA.. | |
Retrocopy | ----ERKQMVVVLWQPLCCYAPRGACFIGERVG<YRHGDICNTCRLPVLHSTDSAKREEHK<RACCEAYD |
Parental | KDMELSFAVQRSKDMVCGICMEVVYEKANPSERRFGILSNCNHTYCLKCIRKWRSAKQFESKIIKSCPEC |
K.MEL...V.RS.D.VCGICMEVVYEKA.....RFGILSNCNHT.CL.CIR.WR.A..FE..IIKSCP.C | |
Retrocopy | KSMEL-VVVKRSVDKVCGICMEVVYEKASHASHRFGILSNCNHTFCLPCIRRWRNAVEFENRIIKSCPQC |
Parental | RITSNFVIPSEYWVEEKEEKQKLIQKYKEAMSNKACRYFDEGRGSCPFGGNCFYKHAYPDGRREEPQRQK |
R..S..VIPSEYWVE..EEKQ.LIQ.YKEA.S...C.YF..G.G.CP.G..CFYKHA.P....EEP.R.. | |
Retrocopy | RVYSRLVIPSEYWVEDEEEKQALIQQYKEAVSKTDCMYFAKGKGHCPYGEKCFYKHAFPESPGEEPPRRR |
Parental | VGTSSRYRAQ |
.G.S..Y..Q | |
Retrocopy | GGSSCVYWVQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000008306 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000003953 | 2 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000011015 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000013474 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000000948 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000019564 | 2 retrocopies | |
Felis catus | ENSFCAG00000024942 | 1 retrocopy | |
Homo sapiens | ENSG00000133606 | 4 retrocopies | |
Gorilla gorilla | ENSGGOG00000023977 | 4 retrocopies | |
Microcebus murinus | ENSMICG00000002114 | 1 retrocopy |
retro_mmur_1184 ,
|
Macaca mulatta | ENSMMUG00000010420 | 3 retrocopies | |
Mus musculus | ENSMUSG00000029922 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000001921 | 4 retrocopies | |
Otolemur garnettii | ENSOGAG00000009877 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000018057 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000019766 | 5 retrocopies | |
Sus scrofa | ENSSSCG00000016498 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000009996 | 3 retrocopies | |
Tursiops truncatus | ENSTTRG00000009528 | 2 retrocopies |