RetrogeneDB ID: | retro_mmul_2597 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | X:73256487..73257446(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.11801 | ||
Ensembl ID: | ENSMMUG00000010420 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 84.92 % |
Parental protein coverage: | 76.96 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | RYFMHGVCKEGDNCRYSHDLSDSPYSVVCKYFQRGYCIYGDRCRYEHSKPLKQEEATATELTTKSSLAAS |
RYFMHGVCK...NC.YSHDLSDSPY.VVCKYFQ.G.C.YGDRCRYEHSKPLKQEEATATELTTKSSLAAS | |
Retrocopy | RYFMHGVCKDEGNCGYSHDLSDSPYGVVCKYFQ*G*CVYGDRCRYEHSKPLKQEEATATELTTKSSLAAS |
Parental | SSLSSIVGPLVEMNTGEAESRNSNFATVGAGSEDWVNAIEFVPGQPYCGRTAPSCTEAPLQGSVTKEESE |
SSLSS......EMNT.E.E.RNSNFATVGAGSEDWVNAIEFVPGQPYCG...PSCTEAPLQG.VTKEESE | |
Retrocopy | SSLSS----IGEMNTSEDE*RNSNFATVGAGSEDWVNAIEFVPGQPYCGLMGPSCTEAPLQGPVTKEESE |
Parental | KEQTAVETKKQLCPYAAVGECRYGENCVYLHGDSCDMCGLQVLHPMDAAQRSQHIKSCIEAHEKDMELSF |
..Q.A.ETKKQLCP.AAVGEC.YG.NCVYLHGDSCDMCG.QVLHPMDA.QRSQH.KSCIEAHEKD.ELSF | |
Retrocopy | EKQIALETKKQLCPHAAVGEC*YGDNCVYLHGDSCDMCGPQVLHPMDATQRSQHVKSCIEAHEKDIELSF |
Parental | AVQRSKDMVCGICMEVVYEKANPSERRFGILSNCNHTYCLKCIRKWRSAKQFESKIIKSCPECRITSNFV |
AVQ.SKDMVC.ICMEVVYEKANPSER.F..LS.CNHTYCLKCI..WR.AKQFESKIIKSCPE..ITSNFV | |
Retrocopy | AVQHSKDMVCRICMEVVYEKANPSERCFVVLSICNHTYCLKCICTWRRAKQFESKIIKSCPEYQITSNFV |
Parental | IPSEYWVEEKEEKQKL-ILKYKEAMSNKACRYFDEGRGSCPFGGN |
IPSEYWVEEKEEKQKL....YKE.MSNKACRYFDEG.GSCPFGGN | |
Retrocopy | IPSEYWVEEKEEKQKL<LQTYKETMSNKACRYFDEGCGSCPFGGN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .45 RPM | 75 .75 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 71 .79 RPM |
SRP007412_cerebellum | 0 .26 RPM | 85 .63 RPM |
SRP007412_heart | 0 .24 RPM | 57 .30 RPM |
SRP007412_kidney | 0 .47 RPM | 59 .04 RPM |
SRP007412_liver | 0 .28 RPM | 31 .27 RPM |
SRP007412_testis | 6 .37 RPM | 693 .30 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_3234 |