RetrogeneDB ID: | retro_sscr_637 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 2:119901883..119902680(+) | ||
Located in intron of: | ENSSSCG00000014196 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MKRN1 | ||
Ensembl ID: | ENSSSCG00000016498 | ||
Aliases: | None | ||
Description: | makorin ring finger protein 1 [Source:HGNC Symbol;Acc:7112] |
Percent Identity: | 67.77 % |
Parental protein coverage: | 55.39 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | ATTPGAGAAAAAVAAASPTPIPAVTSPSPGAGGG-GGGSDSGGGGWTKQVTCRYFMHGVCKEGDNCRYSH |
A..P...A......AA...P.....SP.PG..GG.GG.S...G..WTKQVTCRYF.HGVCKEGDN.RYSH | |
Retrocopy | AAAP*TIATTSKAGAAVVSPPLSLQSP-PGLRGG>GGCSNGSGCSWTKQVTCRYFIHGVCKEGDNRRYSH |
Parental | DLSDSPYGVVCKYFQRGYCIYGDRCRYEHSKPLKQEETT-ATDLTAESSLAASSSLS--AVVGPIVEMNM |
DLSDSP....CKYFQ.GY.IYGDRCRYEHSKP.KQE.TT..TD...........S.S..A.VGPIVEMNM | |
Retrocopy | DLSDSP---ACKYFQQGY*IYGDRCRYEHSKPRKQEQTT<CTDPIETTAESSLASSSLSAAVGPIVEMNM |
Parental | GEAESRNSNFATVGAGSEDWVNAIEFVPGQPYCGRTAPSCTEAPLQSSVTKQESEKEQTAVETKKQLCPY |
GEAESR.SNFATVG.GSEDWVN..EFVPGQPYC..TAPSCTE..L..SVTK.ESE.EQ...ETKKQLCPY | |
Retrocopy | GEAESRKSNFATVGVGSEDWVNTSEFVPGQPYCSGTAPSCTEETLKGSVTKNESEEEQMVLETKKQLCPY |
Parental | AAVGECRYGENCVYLHGDPCDMC-GLQV-LHPVDAAQRSQHIKSCIEAHEKDMELSFAVQRSK |
A.VGEC.Y.ENCVYL.......C.G..V.LHPVDA.QRSQHIKSCIEA.EKDMELSFAVQ.SK | |
Retrocopy | AVVGECSYRENCVYLSIETPVICVGCRV<LHPVDATQRSQHIKSCIEAQEKDMELSFAVQSSK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 88 .00 RPM |
SRP014902_testis | 0 .00 RPM | 117 .54 RPM |
SRP018288_heart | 0 .00 RPM | 41 .39 RPM |
SRP018288_kidney | 0 .00 RPM | 54 .08 RPM |
SRP018288_liver | 0 .00 RPM | 31 .82 RPM |
SRP018288_lung | 0 .00 RPM | 78 .10 RPM |
SRP018856_adipose | 0 .05 RPM | 95 .01 RPM |
SRP035408_brain | 0 .00 RPM | 97 .60 RPM |
SRP035408_liver | 0 .00 RPM | 35 .17 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000008306 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000003953 | 2 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000011015 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000013474 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000000948 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000019564 | 2 retrocopies | |
Homo sapiens | ENSG00000133606 | 4 retrocopies | |
Gorilla gorilla | ENSGGOG00000023977 | 4 retrocopies | |
Microcebus murinus | ENSMICG00000002114 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000010420 | 3 retrocopies | |
Mus musculus | ENSMUSG00000029922 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000001921 | 4 retrocopies | |
Otolemur garnettii | ENSOGAG00000009877 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000018057 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000019766 | 5 retrocopies | |
Sus scrofa | ENSSSCG00000016498 | 2 retrocopies |
retro_sscr_43, retro_sscr_637 ,
|
Tarsius syrichta | ENSTSYG00000009996 | 3 retrocopies | |
Tursiops truncatus | ENSTTRG00000009528 | 2 retrocopies |