RetrogeneDB ID: | retro_pabe_3776 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | X:71629723..71630569(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MKRN1 | ||
Ensembl ID: | ENSPPYG00000018057 | ||
Aliases: | None | ||
Description: | makorin ring finger protein 1 [Source:HGNC Symbol;Acc:7112] |
Percent Identity: | 82.52 % |
Parental protein coverage: | 68.42 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | SVTELTTKSSLAASSSLSSIVGPLVEMNTGEAESRNSNFATVGAGSEDWVNAIEFVPGQPYCGRTAPSCT |
...ELTTKSSLAASSSLSS.....VEMNT.EAESRNSNFA.VGAGSEDWVNAIEFVPGQPYCG.T.PS.T | |
Retrocopy | TAAELTTKSSLAASSSLSS----IVEMNTSEAESRNSNFASVGAGSEDWVNAIEFVPGQPYCGPTVPSFT |
Parental | EAPPQGSVTKEESEKEQTAVETKKQLCPYAAVGECRYGENCVYLHGDSCDMCGLQVLHPMDAAQRSQHIK |
EAP.QG.VT.EESEK.Q.A.ETKKQLCP.AAVGEC.Y.ENCVYLHGDSCDMCG.QVLHPMDAAQRSQ.IK | |
Retrocopy | EAPLQGPVTMEESEKKQIAMETKKQLCPFAAVGEC*YEENCVYLHGDSCDMCGPQVLHPMDAAQRSQCIK |
Parental | SCIEAHEKDMELSFAVQRSKDMVCGICMEVVYEKANPSERRFGILSNCNHTYCLKCIRKWRSAKQFESKI |
SCIEAHEKD.ELSFAVQRSKDMVCGICMEVVYEKANPSER.F..LS.CNHTYCLKCI..WRSAKQFESKI | |
Retrocopy | SCIEAHEKDIELSFAVQRSKDMVCGICMEVVYEKANPSERCFVVLSICNHTYCLKCICTWRSAKQFESKI |
Parental | IKSCPECRITSNFVIPSEYWVEEKEEKQKLILKYKEAMSNKACRYFDEGRGSCPFGGNCFYKHAYPDGRR |
IKSCPEC.ITSN.VIPSEYWVEEKEEKQKL..KYKE.M.NK.C.YFDEG.GSCPFGGNCFYKH....G.R | |
Retrocopy | IKSCPECQITSNLVIPSEYWVEEKEEKQKLVQKYKEKMRNKVCTYFDEGHGSCPFGGNCFYKHV*RGGER |
Parental | EEPQRQ |
....R. | |
Retrocopy | SHRDRK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 90 .12 RPM |
SRP007412_cerebellum | 0 .00 RPM | 95 .21 RPM |
SRP007412_heart | 0 .00 RPM | 43 .38 RPM |
SRP007412_kidney | 0 .20 RPM | 62 .02 RPM |
SRP007412_liver | 0 .06 RPM | 35 .47 RPM |