Parental gene:

RPS20, ENSOPRG00000011042

Aliases:None
Description:ribosomal protein S20 [Source:HGNC Symbol;Acc:10405]
Organism:Southern American pika (Ochotona princeps)
Coordinates:GeneScaffold_3823:427217..428542(-)


>ENSOPRG00000011042
ATGGCTTTTAAGGATACCGGCAAGACGCCCGTGGAGCCCGAGGTGGCCATCCATCGCATCAGGATCACGCTGACCAGCCG
CAACGTCAAGTCCCTGGAGAAGGTGTGTGCTGACTTGATCAGAGGAGCAAAGGAGAAGAATCTGAAAGTGAAAGGACCAG
TTCGGATGCCTACCAAGACTCTGAGAATCACTACCAGAAAAACGCCCTGTGGGGAAGGGTCCAAGACCTGGGACCGCTTC
CAGATGAGGATCCACAAGCGGCTCATCGACCTGCACAGTCCTTCGGAGATTGTGAAGCAGATCACCTCCATCAGCATTGA
GCCGGGAGTGGAGGTGGAGGTCACCATCGCAGATGCCTAA

Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000019147 ortholog_one2one 11 retrogenes
Canis familiaris ENSCAFG00000029884 ortholog_one2one 20 retrogenes
Callithrix jacchus ENSCJAG00000016631 ortholog_one2one 4 retrogenes
Dipodomys ordii ENSDORG00000005794 ortholog_one2one 2 retrogenes
Echinops telfairi ENSETEG00000003394 possible_ortholog 3 retrogenes
Felis catus ENSFCAG00000029233 ortholog_one2one 22 retrogenes
Homo sapiens ENSG00000008988 ortholog_one2one 26 retrogenes
Gorilla gorilla ENSGGOG00000001837 ortholog_one2one 21 retrogenes
Macropus eugenii ENSMEUG00000014171 ortholog_one2one 21 retrogenes
Monodelphis domestica ENSMODG00000009114 ortholog_one2one 6 retrogenes
Mustela putorius furo ENSMPUG00000010452 possible_ortholog 15 retrogenes
Nomascus leucogenys ENSNLEG00000001214 possible_ortholog 19 retrogenes
Otolemur garnettii ENSOGAG00000007760 ortholog_one2one 10 retrogenes
Procavia capensis ENSPCAG00000004300 ortholog_one2one 3 retrogenes
Pongo abelii ENSPPYG00000018600 ortholog_one2one 30 retrogenes
Pan troglodytes ENSPTRG00000020264 ortholog_one2one 27 retrogenes
Rattus norvegicus ENSRNOG00000008555 ortholog_one2many 7 retrogenes
Sarcophilus harrisii ENSSHAG00000011200 ortholog_one2one 10 retrogenes
Sus scrofa ENSSSCG00000006249 ortholog_one2one 12 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_opri_41 96.64 100.00
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2. retro_opri_53 96.64 100.00
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3. retro_opri_164 84.17 100.00
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4. retro_opri_402 65.28 59.66
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5. retro_opri_592 75.44 94.12
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6. retro_opri_906 62.61 92.44
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7. retro_opri_980 96.64 100.00
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8. retro_opri_1022 96.64 100.00
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9. retro_opri_1024 76.47 56.30
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10. retro_opri_1156 84.17 100.00
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11. retro_opri_1206 57.32 67.23
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Download FASTA sequences of all ENSOPRG00000011042 retrocopies